BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951309

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64720.1 | Symbols:  | Protein of unknown function (DUF1278)...   725    0.0  


> AT5G64720.1 | Symbols:  | Protein of unknown function (DUF1278) 
| chr5:25872346-25872813 REVERSE LENGTH=468
Length=468

 Score =  725 bits (392),  Expect = 0.0
 Identities = 440/464 (95%), Gaps = 0/464 (0%)
 Strand=Plus/Plus

Query  22   ATGGCCACTAAATCTACTTCCAAGCCTCTTCTGCTCTCATTTCTAATGATGTCATATCTC  81
            ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTACTAAATCTACTTCGAAGCCTCTTCTGCTCTCATTTCTAATGATGTCATATCTC  60

Query  82   ATATCGATCTTTCATGTCATCACTGTCGCCGAGGGAAGGACTCTCCAGATCACGACGCTG  141
            ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct  61   ATATCGACCTTTCATGTCATCACTGTCGCCGAGGGAAGGACTCTCCAGTTCACGAAGATG  120

Query  142  GCTAAGGACCATTCCGGCGCCGGAAACTTAATGGATTGTTGGAACGCGGGTTTAGAGCTT  201
            |||| ||| |||||||||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct  121  GCTACGGATCATTCCGGCGCCGGAAACTTGATGGACTGTTGGAACGCGGGGTTGGAGCTT  180

Query  202  AAGTCATGCACCGACGAGATTGTCAAGTTCTTCCTTAGTCAAACCGGTACGACTGAACCG  261
            |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct  181  AAGTCATGCACCGATGAGATTGTCAAGTTTTTCCTTAGTCAAACCGGTACGAGTGAACCG  240

Query  262  GCGGTTAAAGGTGGAATTGACAAAGATTGTTGTGGAGCCATTGGGTTGGTTGTGAAAGAT  321
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CCGGTTAAAGGTGGAATTGACAAAGATTGTTGTGGAGCCATTGGGTTGGTTGTGAAAGAT  300

Query  322  TGTTGGTCCGTTATGTTTACTTCTTTAGGGCTTACGACTATGGAAGGGAATAATTTGAGA  381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  301  TGTTGGTCCGTTATGTTTACTTCTTTAGGGCTTACGACTATGGAAGGGAATAACTTGAGA  360

Query  382  GAGTATTGTGAGTTTCAAGCGGAGAAGCCGGAGTTGTCTCCGTCTCCGGCGCCGGAAACT  441
            |||||||||||||||||||| |||||| |||| || ||||| || |||||||||||||||
Sbjct  361  GAGTATTGTGAGTTTCAAGCTGAGAAGTCGGAATTATCTCCTTCACCGGCGCCGGAAACT  420

Query  442  TTGGCTTTGTCTCCGGTTGAGATAACGTACCCCGGACTTGATTA  485
            ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  421  TTGGCTTTGTCTCCGGTTGAGATAACGTATCCCGGACTTGATTA  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24162624707


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5