BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951310
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64730.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1555 0.0
> AT5G64730.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:25873112-25875267 FORWARD LENGTH=1180
Length=1180
Score = 1555 bits (842), Expect = 0.0
Identities = 908/940 (97%), Gaps = 4/940 (0%)
Strand=Plus/Plus
Query 6 TTTCCAGGCGAGAGAGATGAGCGCGGCGGCGGAGCTGCCGACGAAAGAGGCACACATACT 65
||| |||||||||||||||| || ||| |||||||||||||||| ||||||||||||||
Sbjct 20 TTT-CAGGCGAGAGAGATGA--GC-GCGACGGAGCTGCCGACGAAGGAGGCACACATACT 75
Query 66 TAAAGGTCACGAGGGGGCGGTTTTAGCGGCGAGGTTTAACGGCGATGGAAACTACGCTCT 125
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 76 TAAAGGCCACGAGGGGGCGGTTTTAGCGGCGAGGTTTAACGGTGACGGAAACTACGCTCT 135
Query 126 CACCTGCGGCAAGGATCGAACCATCCGCCTCTGGAACCCACACCGTGGAATCTTAATCAA 185
|||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 136 CACCTGTGGCAAGGATCGAACTATCCGCCTCTGGAACCCGCACCGTGGAATCTTAATCAA 195
Query 186 GACCTACAAATCCCATGGCCGCGAAGTCCGCGACGTTCATGTTACTTCAGACAATGCCAA 245
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GACCTACAAATCTCATGGCCGCGAAGTCCGCGACGTTCATGTTACTTCAGACAATGCCAA 255
Query 246 ATTTTGTTCATGTGGTGGTGATCGGCAAGTTTATTACTGGGATGTTTCAACCGGACGTGT 305
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 256 ATTTTGCTCATGTGGTGGTGATCGGCAAGTTTACTACTGGGATGTTTCAACTGGACGTGT 315
Query 306 AATCCGTAAATTCCGTGGTCACGATGGAGAGGTCAATGCAGTGAAGTTCAATGATTCGTC 365
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 316 AATCCGTAAATTCCGTGGTCATGATGGAGAGGTCAATGCAGTGAAGTTCAATGATTCGTC 375
Query 366 GTCTGTAGTTGTATCAGCTGGTTTCGATCGTTCGCTACGTGTATGGGACTGCAGATCTCA 425
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 376 GTCTGTGGTTGTATCAGCTGGGTTCGATCGTTCGCTACGTGTATGGGACTGCAGATCTCA 435
Query 426 CAGTGTTGAGCCAGTACAGATCATTGATACATTTTTGGATACAGTCATGTCTGTTGTTTT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CAGTGTTGAGCCAGTACAGATCATTGATACATTTTTGGATACAGTCATGTCTGTTGTTTT 495
Query 486 AACAAAGACTGAGATTATTGGTGGTAGTGTCGATGGAACTGTTCGCACATTTGACATGCG 545
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 496 AACAAAGACTGAGATTATTGGTGGTAGTGTCGATGGAACAGTTCGCACATTTGACATGCG 555
Query 546 TATCGGTAGGGAGATGTCCGATAACCTAGGCCAACCGGTTAATTGTATATCGATATCAAA 605
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 556 TATCGGTAGGGAGATGTCAGATAACCTAGGCCAACCGGTTAACTGTATATCGATATCAAA 615
Query 606 TGATGGAAATTGCGTTTTAGCTGGTTGCTTGGATTCTACTCTGCGTCTACTTGACAGAAC 665
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 616 TGATGGAAACTGCGTTTTAGCTGGTTGCTTGGATTCTACTCTGCGTCTACTTGACAGGAC 675
Query 666 CACAGGAGAACTACTCCAAGTCTATAAAGGTCATATTTCCAAGTCATTTAAAACGGATTG 725
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CACAGGAGAGCTACTCCAAGTCTATAAAGGTCATATTTCCAAGTCATTTAAAACGGATTG 735
Query 726 TTGCCTCACGAATTCTGATGCACATGTGATTGGAGGATCAGAGGATGGATTGGTTTTCTT 785
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TTGCCTCACGAATTCGGATGCACATGTGATTGGAGGATCAGAGGATGGATTGGTTTTCTT 795
Query 786 TTGGGATTTGGTAGATGCAAAAGTGGTATCGAAATTTCGAGCTCATGATTTAGTGGTGAC 845
||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct 796 TTGGGATTTGGTAGATGCAAAAGTGCTATCGAAATTTAGAGCTCACGATTTAGTGGTGAC 855
Query 846 AAGTGTGAGTTACCACCCGAAAGAAGACTGTATGTTGACTTCTTCGGTCGATGGTACAGT 905
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 856 AAGCGTGAGTTACCACCCGAAGGAAGACTGTATGTTGACTTCTTCGGTCGATGGTACAAT 915
Query 906 TCGTGTCTGGAAAAAATGAAGAAACAACAAATCTTGACTT 945
||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TCGTGTCTGGAAAAAATGAAGAAACAACAAATCTTGACTT 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5