BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951320
Length=429
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64816.1 | Symbols: | unknown protein; Has 30201 Blast hits... 664 0.0
> AT5G64816.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25913028-25914003
FORWARD LENGTH=583
Length=583
Score = 664 bits (359), Expect = 0.0
Identities = 415/440 (94%), Gaps = 12/440 (3%)
Strand=Plus/Plus
Query 1 ATTCAAGTCTT---TAAGA-AAAAATGGTGGAGGTGTGGTGGTCACTGATAGGAGCAGCA 56
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 43 ATTCAAGTCTTAAAGAAGAGAAAAATGGTGGAGGTGTGGTGGTCACTGATAGGAGCAGCA 102
Query 57 GTGCCTGCACTAATTGCAGGTCAAGCATGGAGGATAAAGAAGAGACATGGCGAAGAAGAG 116
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 103 GTGCCTGCACTAATTGCTGGTCAAGCTTGGAGGATAAAGAAGAGACATGGCGAAGAAGAG 162
Query 117 AGGATCAAGAGTGCTCGAGGCAGAGAGAAAAGCTCTGATGAAATCTTTGTCTGTGAAAGA 176
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 163 AGGATCAAGAGTGCTCGAGGAAGAGAGAAAAGCTCTGATGAAATCTTTGTCTGTGAAAGA 222
Query 177 GTTTGCACTTCTAAAAGAATGCTGAAAAAGGTTGGAGCTTTCTCTAAAGATCCCATCCCC 236
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 223 GTTTGCACTTCCAAAAGAATGCTGAAAAAAGTTGGAGCTTTCTCTAAAGATCCTATCCCC 282
Query 237 GACACTTGTGTTACTGTCTGCGGTGTATCTGAGCTCGACGCTTGCTCTGATGCTTGCGCG 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 283 GACACTTGTGTTACTGTCTGCGGTGTATCTGAGCTCGACGCTTGCTCTGATGCTTGTGCT 342
Query 297 CGAACCGTTTGCGTTAATCAGCATCAAGTTGCTAATTGGAATGACATTTGTCTCAGAAGA 356
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CGAACTGTTTGCGTTAACCAGCATCAAGTTGCTAATTGGAATGACATTTGTCTCAGAAGA 402
Query 357 TGTCAAAGTGAATGTCTTAAGctctcttcttcttcttct-cg-ctc--t-t-cttGAATT 410
||||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||
Sbjct 403 TGTCAAAGTGAATGTCTTAAGCTCTCTTCTTCTTCTTCTTCTTCTCGCTATTCTTGAATT 462
Query 411 TGAAA-GACTATGGTTTGTT 429
||||| | ||||| ||||||
Sbjct 463 TGAAATG-CTATGATTTGTT 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20358438345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5