BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951329

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64900.1 | Symbols: PROPEP1, ATPEP1, PEP1 | precursor of pep...   202    1e-51


> AT5G64900.1 | Symbols: PROPEP1, ATPEP1, PEP1 | precursor of peptide 
1 | chr5:25937170-25938093 FORWARD LENGTH=516
Length=516

 Score =  202 bits (109),  Expect = 1e-51
 Identities = 150/169 (89%), Gaps = 5/169 (3%)
 Strand=Plus/Plus

Query  6    TCTCATCAGATCTCAATGGACAAATTAGGCAGACGAAGCGAAGAAGAAAGTTATCTATGT  65
            ||| |||||||||||||||| |||| ||  |||||||||   ||||||||| | ||||| 
Sbjct  69   TCTTATCAGATCTCAATGGAGAAATCAGATAGACGAAGC---GAAGAAAGTCACCTATGG  125

Query  66   ATTCCTCTTCAGTGTCTCGACCAAACTCTCAAAGCTATCTTGAAATGCCTTGGTCTTTTT  125
            |||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct  126  ATTCCTCTTCAGTGCCTCGACCAAACCCTCAGAGCTATCTTGAAATGCCTTGGTCTTTTT  185

Query  126  CATCAAGATTCTCCGACAACGTCGTCTCCGGGAATTTC-AAACCAGCCG  173
            ||||||||||||||||||||||| ||||| |||| ||| |||| |||||
Sbjct  186  CATCAAGATTCTCCGACAACGTCCTCTCCCGGAACTTCGAAAC-AGCCG  233



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10505959541


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5