BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951330

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64905.1 | Symbols: PROPEP3 | elicitor peptide 3 precursor |...   407    4e-113


> AT5G64905.1 | Symbols: PROPEP3 | elicitor peptide 3 precursor 
| chr5:25939574-25940059 FORWARD LENGTH=486
Length=486

 Score =  407 bits (220),  Expect = 4e-113
 Identities = 293/326 (90%), Gaps = 14/326 (4%)
 Strand=Plus/Plus

Query  1    AAAAGGATTAAGAAATCAACAATGGAGAATCTGAGAAATGGCCAAGAAAACGGTTCTCAC  60
            |||| ||||||||| ||||| ||||||||||| ||||||||  |||| |||||||||   
Sbjct  40   AAAAAGATTAAGAAGTCAACGATGGAGAATCTCAGAAATGGAGAAGATAACGGTTCT---  96

Query  61   TGGATCCCATTTACGTTCTTTGATCAATCTTCAGTGACGATTCCTCTCTTGAAGTGTTTC  120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  97   TTGATCCCATTTACGTTCTTTGATCAATCTTCAGTGACGATTCCTCTCTTGAAGTGTTCC  156

Query  121  GGTCTCGATAGCTCTTCTTCATCATCATCTTCTTCTGGCGATTTTTCGTCATCTCACAGC  180
            |||||||| || | | | |||||||||||||||||| ||||| |||||||||| ||||||
Sbjct  157  GGTCTCGAAAG-T-T-CATCATCATCATCTTCTTCTTGCGATCTTTCGTCATCACACAGC  213

Query  181  GAGGAAGATGAGAGTATCGATATAAAGGAGGAGGA-G--GA-G--GAAGAAGATGAAATG  234
            ||||||||||||||||||||||||||||||||||| |  || |  ||||||||||  |||
Sbjct  214  GAGGAAGATGAGAGTATCGATATAAAGGAGGAGGAAGAAGAAGAAGAAGAAGATGGCATG  273

Query  235  ACCATTGAAATCAAAGCGCGAGGGAAGACCAAGCCTAAGCCT-CAGCCAAGTTCAGGAAA  293
            |||||||||||||||||| ||||||||| |||| |||||||| | |||||||||||||||
Sbjct  274  ACCATTGAAATCAAAGCGAGAGGGAAGAACAAGACTAAGCCTAC-GCCAAGTTCAGGAAA  332

Query  294  AGGAGGCAAACACAATTAGAGTTCAT  319
            ||||||||||||||||||||||||||
Sbjct  333  AGGAGGCAAACACAATTAGAGTTCAT  358



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15482466692


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5