BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951335
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64950.1 | Symbols: | Mitochondrial transcription terminati... 1002 0.0
> AT5G64950.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:25953844-25955160 FORWARD
LENGTH=1317
Length=1317
Score = 1002 bits (542), Expect = 0.0
Identities = 689/759 (91%), Gaps = 13/759 (2%)
Strand=Plus/Plus
Query 1 CCTAGACTTTCGTTTCC-AGTATGCAATTTCTAGCTTCTCTCGTTTCCAATTCCCGAAAT 59
|||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct 24 CCTAAACTTTCGTTTCCAAG-ATGCAATTTCTAGCTTCTCTCGTTTCCAATTCCAGAAAG 82
Query 60 TTTCGTCGGAGATGGAACCGAGCTCTCTCTTTGCATCATTTCTCTTGGAATGCGAGAGAA 119
||| ||||||||||| | ||||||||||| |||||||||||||||| |||||||| | |
Sbjct 83 TTTGGTCGGAGATGGGATCGAGCTCTCTCGTTGCATCATTTCTCTTCGAATGCGACACCA 142
Query 120 GCTTCGGA-ACCAAATGCGGTGTTCGTCGAATTTCTCAGGGACAATGGGTTCCAGAAACC 178
||||| || | ||||| | | ||||||||| |||||||||||||||||||||||||||||
Sbjct 143 GCTTC-GATATCAAATCCAGCGTTCGTCGAGTTTCTCAGGGACAATGGGTTCCAGAAACC 201
Query 179 TCAAGCAATGGCCATCGCAATGCGTTACCCTAATCTCAAATCCCTAGAACAACCTCGATC 238
|| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 202 TCTAGCAATTGCCATCGCAATGCGTTACCCTAACCTCAAATCCCTAGAACAACCTCGGTC 261
Query 239 AGTGATTCAAATGCTTAAAAGTTACAGTTTTTCAGATACCCAGATCCAGAAATCGATCCG 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 262 AGTGATTCAAATGCTTAAAAGTTACAGTTTTTCCGATACCCAGATCCAGAAATCGATCCG 321
Query 299 GGTCCATCCTCAAATGATGTTCTACAAAGTCGAGAAGAAT-CTAGAACCCAAACTTCGAT 357
||||||||||| ||||||||||||||| || ||||| ||| |||||||||||||||||||
Sbjct 322 GGTCCATCCTCGAATGATGTTCTACAACGTGGAGAA-AATTCTAGAACCCAAACTTCGAT 380
Query 358 TCTTTGAAGAAATTGGATTCT-CTGGCTCTGATCTTGGTAAGTTCGTCTCTCAACATTCC 416
||||| |||| |||||||| | ||||||||| |||||||||||||||||||||| | ||
Sbjct 381 TCTTTAAAGATATTGGATT-TACTGGCTCTGGTCTTGGTAAGTTCGTCTCTCAAAACTCA 439
Query 417 TCCGGCATTGGTATAAGTCTAGTGAGAAAAAT-GATTCCTACCGTTGAGATTCTGAAATC 475
|| | | ||||| |||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct 440 TCAGTCGTTGGTGTAAGTCTAGTGA-AGAAATTGATTCCTACCGTTGAGATTCTGAAATC 498
Query 476 GATTGTGGCTCCAAAACACGAACACCTTACTGTGATTCTTAGTAGATGTGGTTGGCTTCT 535
|||||| || |||||||| ||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 499 GATTGTTGCCCCAAAACATGAAGACCTTCCTGTCATTCTTAGTAGATGTGGTTGGCTTCT 558
Query 536 -CG--GTAGAGACCCTAACTTGTTTCTCTTACCAAACATCTCTTACCTCAAAACCTGTGG 592
| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 559 TCTCAGTAGAGACCCTAACTTGTTTCTCTTACCAAACATCTCATACCTTGAAACCTGTGG 618
Query 593 AATCGTTGAGTCTCAGCTTGCTTCTTTACTTAGAAGACAGCCAAGGATCTTCAATGTCCC 652
||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 619 AATTGTTGGGTCTCAGCTTGCTTCTTTACTTAGAAGACAGCCAAGAATCTTCAATCTCTC 678
Query 653 TGAGGAAAAACTCAGAGGGTATGTCTCTCGTGCTCTGGAACTCGGTTTTAATCTGAACTC 712
|||||||||||||||||| ||||||||||||||| |||| || ||||||| | |||||||
Sbjct 679 TGAGGAAAAACTCAGAGGATATGTCTCTCGTGCTTTGGATCTTGGTTTTACTTTGAACTC 738
Query 713 GAGGATGCTTGTGCACGCTGTTCTCTCGTTAAGTTCTTT 751
|||||||||||||||||||||| ||||||||||||||||
Sbjct 739 GAGGATGCTTGTGCACGCTGTTATCTCGTTAAGTTCTTT 777
Score = 472 bits (255), Expect = 5e-132
Identities = 312/339 (92%), Gaps = 5/339 (1%)
Strand=Plus/Plus
Query 754 ATGAGATAACAGATATTATACGAAGATCTCCAGGTTTGATCCGGTGCGCAGAAGATAAGC 813
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 837 ATGAGATAACAGATATTATACGAAGATCTCCAGGTTTGATCCGGTGCTCAGAAGATAAGC 896
Query 814 TTACACTGGGGTTTGAGTTTTACATGAAGAGAATGGGGATAGAGAGAGAAGCTTTGGTGA 873
||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||
Sbjct 897 TTACACTGGGGTTTGAGTTTTACTTGAAGAGAATGGGGTTAGAGAGGGAAGCTTTGGCGA 956
Query 874 AACGTCCGTGTGTGTTGAT-GTATAATCTTGAGAAGAGGGTGATTCCAAGGCTTAAAGTT 932
||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 957 AACGTCCTTGTGTGTTG-TCGTATAATCTTGAGAAGAGGGTGATTCCTAGGCTTAAAGTT 1015
Query 933 TTGCAGATCTTGAGGGAAAAAGGGTTGTTATTGgaagaggagaagaagaagaagaagaaC 992
||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 1016 TTGCAGATCTTGAGGGAAAAAGGGTTGTTGTTAAAAGAGGAGAAGAAGAAGAAGAA---C 1072
Query 993 ATGTTTGACATTGTGGAGATGACTGAGGAAGCTTTTCTGGAGAAATATGTGGTAAGATTT 1052
||| ||| |||||| ||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1073 ATGGTTGGCATTGTTGAGATGACTGAGGAAGCTTTTCTAGAGAAATATGTTGTGAGATTT 1132
Query 1053 GGAGATGAGACTGCTGAGGAATTATTGGTAGCTTATAAG 1091
|||||||||| |||||||||| | |||| ||||| |||
Sbjct 1133 GGAGATGAGATTGCTGAGGAACTGCTGGTTGCTTACAAG 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58383233835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5