BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951336
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64960.1 | Symbols: CDKC2, CDKC;2 | cyclin dependent kinase ... 2503 0.0
AT5G10270.1 | Symbols: CDKC;1 | cyclin-dependent kinase C;1 | c... 1611 0.0
AT5G64970.1 | Symbols: | Mitochondrial substrate carrier famil... 616 3e-175
> AT5G64960.1 | Symbols: CDKC2, CDKC;2 | cyclin dependent kinase
group C2 | chr5:25955381-25958995 FORWARD LENGTH=2135
Length=2135
Score = 2503 bits (1355), Expect = 0.0
Identities = 1515/1590 (95%), Gaps = 19/1590 (1%)
Strand=Plus/Plus
Query 4 TCAGATTCTCTGTTGAATCATGGCGGTTGCGGCTTTTGGGCAGTTAAATCTCGAGGAGCC 63
||||| | || ||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 100 TCAGA-T-TCGGTTGAATAATGGCGGCTGCGGCTTTTGGGCAGTTAAATCTAGAGGAGCC 157
Query 64 TCCACCGATTTGGGGATCTCGTAGTGTCGATTGCTTCGAGAAGCTTGAACAGATTGGTGA 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 TCCACCGATTTGGGGATCTCGTAGTGTCGATTGCTTCGAGAAGCTTGAACAGATTGGTGA 217
Query 124 AGGAACTTACGGTCAAGTGTACATGGCTAAAGAAATTAAAACTGGTGAAATCGTGGCTCT 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 AGGAACTTACGGCCAAGTGTACATGGCTAAAGAAATTAAAACTGGTGAAATCGTGGCTCT 277
Query 184 CAAAAAGATCCGTATGGACAATGAAAGAGAAGGGTTTCCGATAACAGCTATCCGGGAGAT 243
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 278 GAAAAAGATCCGTATGGACAATGAAAGAGAAGGGTTTCCGATAACCGCTATCCGGGAGAT 337
Query 244 AAAAATTCTGAAGAAGCTACATCATGAAAATGTCATCCATTTGAAAGAGATTGTGACTTC 303
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 338 CAAAATTCTGAAGAAGCTGCATCATGAAAATGTCATCCATTTGAAAGAGATTGTTACTTC 397
Query 304 TCCAGGTCGAGATAGGGATGATCAAGGAAAGCCAGATAATAATAAATACAAGGGTGGAAT 363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 398 TCCAGGTCGAGATAGGGATGATCAAGGAAAGCCAGATAATAACAAATACAAGGGTGGAAT 457
Query 364 CTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACT 517
Query 424 GAGATTTACTGTCCCTCAGATAAAGTGTTACATGAAGCAACTGCTCACTGGGCTCCACTA 483
||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 518 GAGATTTACGGTTCCTCAGATAAAGTGTTACATGAAGCAACTGCTGACTGGGCTTCACTA 577
Query 484 TTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGGTTCGAACCTACTTATTGACAA 543
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 578 TTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGGTTCGAATCTACTTATTGACAA 637
Query 544 TGAGGGAAATTTAAAGCTTGCGGATTTTGGGCTTGCTCGGTCATTTTCTCATGATCATAC 603
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 638 TGAGGGAAATTTAAAGCTAGCGGATTTTGGGCTTGCTCGGTCATATTCTCATGATCATAC 697
Query 604 TGGAAACCTTACAAACCGTGTCATCACATTGTGGTATAGGCCTCCGGAATTGCTACTTGG 663
||||||||| ||||| ||||||||||| |||||||||||||| || |||||| |||||||
Sbjct 698 TGGAAACCTCACAAATCGTGTCATCACTTTGTGGTATAGGCCCCCTGAATTGTTACTTGG 757
Query 664 TGCAACTAAATATGGACCAGCGATTGACATGTGGTCGGTTGGATGCATATTTGCTGAACT 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 758 TGCAACTAAATATGGACCAGCGATTGACATGTGGTCAGTTGGATGCATATTTGCTGAACT 817
Query 724 TCTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAGAGTGAACAACTGAATAAGATTTA 783
| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 818 TTTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAGAATGAACAATTGAATAAGATTTA 877
Query 784 TGAACTTTGTGGATCACCGGATGAAAACAACTGGCCTGGAGTTTCCAAGATGCCTTGGTA 843
||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 878 TGAGCTTTGTGGATCACCTGATGAAAGCAACTGGCCTGGAGTTTCCAAGATGCCTTGGTA 937
Query 844 TGGCCAAATGAAATCATCTCGGCCCTTAAAGAGACGCGTAAGGGAGATCTACAGGCACTT 903
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 938 TAACCAAATGAAATCATCTCGGCCCTTAAAGAGACGCGTAAGGGAGATCTACAGACACTT 997
Query 904 TGATCGCCATGCCCTTGAACTACTTGAGAAAATGTTGGTACTTGACCCAGCCCAGAGAAT 963
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 998 TGATCGCCATGCCCTTGAACTACTTGAGAAAATGTTGGTACTTGACCCATCTCAGAGAAT 1057
Query 964 AT-CTGCAAAGGATGCACTTGATGCTGAGTACTTTTGGACTGATCCGCTGCCATGTGATC 1022
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 ATGC-GCAAAGGATGCTCTTGATGCTGAGTACTTTTGGACTGATCCGCTGCCATGTGATC 1116
Query 1023 CAAAGAGTCTACCGACATATGAATCATCACATGAGTTCCAGACAAAGAAAAAGCGGCAAC 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1117 CAAAGAGTCTACCGACATATGAATCATCACATGAGTTCCAGACAAAGAAAAAACGGCAAC 1176
Query 1083 AGATGCGCCATAACGAGGAAGCAGCCAAAAAACAGAAACTGCAGCATCCACCGCAGCAAC 1142
||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1177 AGATGCGTCATAATGAGGAAGCAGCCAAAAAACAGAAACTGCAGCATCCACAGCAGCAAC 1236
Query 1143 ATTCTCGTTTACCTCCACAGCAACACGGTGTTGGTCAGTCTCATGCCGCTCCACATTGGC 1202
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1237 ATTCTCGTTTACCTCCACAGCAACACGGTGTTGGCCAGTCTCATGCCGCTCCACTTTGGC 1296
Query 1203 CTGCTGGTCCAAACCACCCTATGAACAACAACGCACCACCACCCCAAATACCTGCTGGTG 1262
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 CTGCTGGACCAAACCACCCTATGAACAACAACGCACCACCACCCCAAATACCTGCTGGTG 1356
Query 1263 GACCTGGCGGCCATTACTATGGA--AA-GCCCCGTGGTGGTGCACCTGGTCAAAACCGGT 1319
| || ||||||||||| || |||||||||||||||||||| || ||||||||
Sbjct 1357 G-CC--------ATTACTATGGAGGAAAGCCCCGTGGTGGTGCACCTGTTCCAAACCGGT 1407
Query 1320 ACCCTCCTAGCGGGAACCAGCCTGGTGGTTATAATAATCAGAGCCGTGGAGGTTACAGCA 1379
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ACCCTCCTAGCGGAAACCAGACTGGTGGTTATAATAATCAGAGCCGTGGAGGTTACAGCA 1467
Query 1380 GCGGATCATATCCTCCACAAGGTCGAGGTGCACCATATGCCGCCGGTCCTAGAGGACCTA 1439
||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1468 GCGGAGCATATCCTCCACAAGGTCGTGGTGCACCATATGGCGCCGGTCCTAGAGGACCTA 1527
Query 1440 GCGGTGGCTATGGTGTTGGACCGCCTAACTACTCCCAAGGTGGTGGTCAGTACGGTGGAT 1499
|||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||
Sbjct 1528 GCGGTGGCTATGGTGTTGGACCACCCAACTACTCACAAGGTGGTGGTCAGTATGGTGGAT 1587
Query 1500 CTGGTGGCTCTGGAAGAGGTCAGAACCCTATGGGTGGTGCTAGAAACCAACAATATGGAT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 CTGGTGGCTCTGGAAGAGGTCAGAACCCTATGGGTGGTGCTAGAAACCAACAATATGGAT 1647
Query 1560 GGCA---GTAAAGAGAACTCAAAGAGTCTC 1586
|||| ||||||||||||||||||| |||
Sbjct 1648 GGCAACCGTAAAGAGAACTCAAAGAGACTC 1677
> AT5G10270.1 | Symbols: CDKC;1 | cyclin-dependent kinase C;1 |
chr5:3221607-3224765 REVERSE LENGTH=1717
Length=1717
Score = 1611 bits (872), Expect = 0.0
Identities = 1298/1499 (87%), Gaps = 48/1499 (3%)
Strand=Plus/Plus
Query 41 GGGCAGTTAAATCTCGAGGAGCCTCCACCGATTTGGGGATCTCGTAGTGTCGATTGCTTC 100
|||||| ||||||||||||| ||||| || || ||||||||||| || || ||||||||
Sbjct 110 GGGCAGCTAAATCTCGAGGAACCTCCTCCAATCTGGGGATCTCGCAGCGTTGATTGCTTT 169
Query 101 GAGAAGCTTGAACAGATTGGTGAAGGAACTTACGGTCAAGTGTACATGGCTAAAGAAATT 160
|||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 170 GAGAAGCTCGAACAAATTGGTGAAGGCACTTACGGTCAAGTTTACATGGCTAAAGAAATC 229
Query 161 AAAACTGGTGAAATCGTGGCTCTCAAAAAGATCCGTATGGACAATGAAAGAGAAGGGTTT 220
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 230 AAAACTGGTGAAATTGTGGCTCTCAAAAAGATACGTATGGACAATGAAAGAGAAGGGTTT 289
Query 221 CCGATAACAGCTATCCGGGAGATAAAAATTCTGAAGAAGCTACATCATGAAAATGTCATC 280
|| ||||||||||| | |||||||| |||||||||||||| |||||||||||||||||
Sbjct 290 CCTATAACAGCTATTAGAGAGATAAAGATTCTGAAGAAGCTTCATCATGAAAATGTCATT 349
Query 281 CATTTGAAAGAGATTGTGACTTCTCCAGGTCGAGATAGGGATGATCAAGGAAAGCCAGAT 340
|| ||||||||||||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct 350 CAGCTGAAAGAGATTGTGACTTCACCAGGTCGGGACAGGGATGACCAAGGAAAGCCAGAT 409
Query 341 AATAATAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGACTTGACT 400
||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 410 AATAACAAATACAAGGGTGGCATCTACATGGTTTTTGAGTACATGGATCATGATTTGACT 469
Query 401 GGACTTGCTGATCGTCCTGGACTGAGATTTACTGTCCCTCAGATAAAGTGTTACATGAAG 460
||||| || |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 470 GGACTAGCAGATCGTCCTGGACTGAGATTTACTGTTCCTCAAATTAAGTGTTACATGAAG 529
Query 461 CAACTGCTCACTGGGCTCCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAA 520
||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAA 589
Query 521 GGTTCGAACCTACTTATTGACAATGAGGGAAATTTAAAGCTTGCGGATTTTGGGCTTGCT 580
|| || || || ||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 590 GGCTCAAATCTCCTTATCGACAATGAGGGAAATTTAAAGCTGGCTGATTTTGGGCTTGCA 649
Query 581 CGGTCATTTTCTCATGATCATACTGGAAACCTTACAAACCGTGTCATCACATTGTGGTAT 640
||||| | ||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 650 CGGTCGTATTCTCATGATCATACTGGAAATCTTACAAATCGTGTCATCACATTGTGGTAT 709
Query 641 AGGCCTCCGGAATTGCTACTTGGTGCAACTAAATATGGACCAGCGATTGACATGTGGTCG 700
||||| || ||||| |||||||| || || |||||||| ||||| |||||||||||||||
Sbjct 710 AGGCCCCCTGAATTACTACTTGGGGCTACAAAATATGGCCCAGCAATTGACATGTGGTCG 769
Query 701 GTTGGATGCATATTTGCTGAACTTCTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAG 760
||||| ||||||||||| |||||| || ||| |||||||||||| |||||||||| ||||
Sbjct 770 GTTGGTTGCATATTTGCCGAACTTTTGCATGCAAAACCAATCTTACCTGGGAAAAATGAG 829
Query 761 -AGTGAACAACTGAATAAGAT-TTATGAACTTTGTGGATCACCGGATGAAAACAAC--TG 816
| |||||| |||| ||||| || ||| |||||||||||||| |||| ||| ||| ||
Sbjct 830 CA-AGAACAATTGAACAAGATATT-TGAGCTTTGTGGATCACCTGATG-AAA-AACTTTG 885
Query 817 GCCTGGAGTTTCCAAGATGCCTTGGTATGGCCAAATGAAATCAT-CTCGGCCCTTAAAGA 875
|||||| ||||||||||||||||||| | ||| | || | | | |||||||| ||||
Sbjct 886 GCCTGGGGTTTCCAAGATGCCTTGGT-TCAACAATTTCAAGCCTGCACGGCCCTTGAAGA 944
Query 876 GACGCGTAAGGGAGATCTACAGGCACTTTGATCGCCATGCCCTTGAACTACTTGAGAAAA 935
| || ||||| ||| ||| ||| ||||||||||| ||||| |||||| |||| |||||||
Sbjct 945 GGCGTGTAAGAGAGTTCTTCAGACACTTTGATCGGCATGCTCTTGAATTACTGGAGAAAA 1004
Query 936 TGTTGGTACTTGACCCAGCCCAGAGAATATCTGCAAAGGATGCACTTGATGCTGAGTACT 995
||||||| ||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1005 TGTTGGTGCTTGATCCAGCACAGAGAATATCGGCAAAGGATGCTCTTGATGCCGAGTACT 1064
Query 996 TTTGGACTGATCCGCTGCCATGTGATCCAAAGAGTCTACCGACATATGAATCATCACATG 1055
|||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 1065 TTTGGACTGATCCGTTGCCATGTGACCCAAAGAGTCTGCCCACATATGAATCATCACATG 1124
Query 1056 AGTTCCAGACAAAGAAAAAGCGGCAACAG-ATGCGCCATAACGAGGAAGCAGCCAAAAA- 1113
||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||
Sbjct 1125 AGTTCCAGACAAAGAAAAAGCGGCAACAGCA-GCGCCAAAACGAGGAAGCAGC-AAAAAG 1182
Query 1114 ACAGAAACTGCAGCATCCACCGCAGCAACATTCTCGTTTACCTCCAC-AGCAACACGGTG 1172
||||||||||||||||||||||| ||| || ||||| ||||| ||| | ||||| ||||
Sbjct 1183 ACAGAAACTGCAGCATCCACCGCTGCAGCACTCTCGCTTACCCCCATTA-CAACATGGTG 1241
Query 1173 TTGGTCAGTCTCATGCCGCTCCACATTGGCCTGCTGGTCCAAACCA-CCCTA-TGAACAA 1230
| ||||||||||| ||||||||||||||||| ||||||||||| ||| | | |||||
Sbjct 1242 --GA-CAGTCTCATGCTGCTCCACATTGGCCTGCAGGTCCAAACCATCCC-ACT-AACAA 1296
Query 1231 CAACGCACCACCACCCCAAATACCTGCTGGTGGACCTGGCGGCCA-TTACTATGGAAAGC 1289
| |||||||||| || |||||||||| ||| || | | || |||||| ||||
Sbjct 1297 C---GCACCACCAC---AAGTACCTGCTGG---ACCCAGCCACAACTT-CTATGGGAAGC 1346
Query 1290 CCCGTGGTGGTGCACCTGGTCAAAACCGGTACCCTCCTAGCGGGAACCAGC-CTGGTGGT 1348
| |||||| ||||||||| |||||| |||||||||||||| |||||| | || |||
Sbjct 1347 CGCGTGGTC---CACCTGGTCCAAACCGCTACCCTCCTAGCGGAAACCAGAGCGGG-GGT 1402
Query 1349 TATAATAATCAGAGCCGTGGAGGTTACAGCAGCGGATCATATCCTCCACAAGGTCGAGGT 1408
|||||| | | ||||| |||||||||||||| |||||||||||||||||||| || ||
Sbjct 1403 TATAATCA--A-AGCCGAGGAGGTTACAGCAGTGGATCATATCCTCCACAAGGACGTGGA 1459
Query 1409 GCACCATATGCCGCCGGTCCTAGAGGACCTAGCGGTGGC---TATGGTGTTGGACCGCCT 1465
|| || |||| || ||||||||||| ||||| |||||| || || |||||||| |||
Sbjct 1460 GCTCCTTATGTGGCTGGTCCTAGAGGGCCTAGTGGTGGCCCGTACGGGGTTGGACCTCCT 1519
Query 1466 AACTACTCCCAAGGTGGTGGTCAGTACGGTGGATCTGGTGGCTCTGGAAGAGGTCAGAA 1524
|||||| | ||||||||| ||||| ||||| |||||| |||| |||||||| |||||
Sbjct 1520 AACTACACACAAGGTGGT---CAGTATGGTGGCTCTGGTAGCTCGGGAAGAGGGCAGAA 1575
> AT5G64970.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:25958025-25960644 REVERSE LENGTH=2269
Length=2269
Score = 616 bits (333), Expect = 3e-175
Identities = 401/431 (93%), Gaps = 15/431 (3%)
Strand=Plus/Minus
Query 1162 GCAACACGGTGTTGGTCAGTCTCATGCCGCTCCACATTGGCCTGCTGGTCCAAACCACCC 1221
||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 2269 GCAACACGGTGTTGGCCAGTCTCATGCCGCTCCACTTTGGCCTGCTGGACCAAACCACCC 2210
Query 1222 TATGAACAACAACGCACCACCACCCCAAATACCTGCTGGTGGACCTGGCGGCCATTACTA 1281
|||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 2209 TATGAACAACAACGCACCACCACCCCAAATACCTGC---TGG---T---GGCCATTACTA 2159
Query 1282 T---GGAAAGCCCCGTGGTGGTGCACCTGGTCAAAACCGGTACCCTCCTAGCGGGAACCA 1338
| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 2158 TGGAGGAAAGCCCCGTGGTGGTGCACCTGTTCCAAACCGGTACCCTCCTAGCGGAAACCA 2099
Query 1339 GCCTGGTGGTTATAATAATCAGAGCCGTGGAGGTTACAGCAGCGGATCATATCCTCCACA 1398
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2098 GACTGGTGGTTATAATAATCAGAGCCGTGGAGGTTACAGCAGCGGAGCATATCCTCCACA 2039
Query 1399 AGGTCGAGGTGCACCATATGCCGCCGGTCCTAGAGGACCTAGCGGTGGCTATGGTGTTGG 1458
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AGGTCGTGGTGCACCATATGGCGCCGGTCCTAGAGGACCTAGCGGTGGCTATGGTGTTGG 1979
Query 1459 ACCGCCTAACTACTCCCAAGGTGGTGGTCAGTACGGTGGATCTGGTGGCTCTGGAAGAGG 1518
||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1978 ACCACCCAACTACTCACAAGGTGGTGGTCAGTATGGTGGATCTGGTGGCTCTGGAAGAGG 1919
Query 1519 TCAGAACCCTATGGGTGGTGCTAGAAACCAACAATATGGATGGCA---GTAAAGAGAACT 1575
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1918 TCAGAACCCTATGGGTGGTGCTAGAAACCAACAATATGGATGGCAACCGTAAAGAGAACT 1859
Query 1576 CAAAGAGTCTC 1586
||||||| |||
Sbjct 1858 CAAAGAGACTC 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5