BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951337
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64970.1 | Symbols: | Mitochondrial substrate carrier famil... 2122 0.0
AT5G64960.1 | Symbols: CDKC2, CDKC;2 | cyclin dependent kinase ... 163 4e-39
> AT5G64970.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:25958025-25960644 REVERSE LENGTH=2269
Length=2269
Score = 2122 bits (1149), Expect = 0.0
Identities = 1272/1331 (96%), Gaps = 9/1331 (1%)
Strand=Plus/Plus
Query 1 TTTGCCATCGAAAACCCAGTAAAATGCGTGGCCTTGATCGATGGATAGCTGAAGCAATCA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTTGCCATCGAAAATTTAGTAAAATGCGTGGCCTTGATCGATGGATAGCTGAAGCAATCA 238
Query 61 GATCAGAGTCATTGGATCACAATGGTCAAATC--CT-CGGTGGATTGTTTCTCGACGAAT 117
||||||||||||| |||||||||||||||||| || |||||| ||||||||||| ||||
Sbjct 239 GATCAGAGTCATTAGATCACAATGGTCAAATCATCTGCGGTGGGTTGTTTCTCGAAGAAT 298
Query 118 CTGTTCCTTCCTCGTCTGTCTCTTTTCTTTCCTCTAAGGATTGTTCCGTCAGTTCGTGTC 177
|| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 299 CTCTTCCTTCCTCGTCTGTCTCTTTTCTTTCGTCGAAGGATTGTTCCGTCAATTCGTGTC 358
Query 178 GTTTCAGTCAAAAGTCGAGATTTTTGAAGTTTAGGAGACGAAATGGGACCAGGGAACCCC 237
| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 359 GCTTCAGTCAAAAGTCGAGTTTTTTGAAGTTTAGGAGACGAAACGGGACCAGGGAACCTC 418
Query 238 TGTTTCTGTCTGTTAGTTTATCGATTAAGGAGGGTAATGGTGAGGAAGAAGAAGGTGAAG 297
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 419 TGTTTCTGTCTGTTAGTTTATCGATTAACGAGAGTAATGGTGAGGAAGAAGAAGGTGAAG 478
Query 298 GGTATAATGGTCAAAACGGCTTTAAATCGGAGAAAGGTTCGGTGTTGATTGGTGGAT-GT 356
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 479 GGTATAATGGTCAAAACGGCTTTAAATCGGAGAAAGGTTCGGTGTTGATCGGTGG-TGGT 537
Query 357 CAAGAAGCCAAGGAGAAGCTTATGGTTAAGGAAACTGGAACAGGAGCTCTCAACACAACC 416
|||||| | |||||||||| || ||||||||||| |||| ||||||||||||||||||||
Sbjct 538 CAAGAATCTAAGGAGAAGCGTAGGGTTAAGGAAAATGGAGCAGGAGCTCTCAACACAACC 597
Query 417 AAGCATTTATGGGCTGGAGCTTTTGCTGCCATGGTTTCAAGAACTTGCATTGCACCTCTT 476
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 AAGCATTTATGGGCTGGAGCTTTTGCAGCCATGGTTTCAAGAACTTGCATTGCACCTCTT 657
Query 477 GAGCGGATGAAGCTAGAATACATTGTTCGTGGAGAGCAAGGGAATCTTCTTGAACTCATT 536
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GAACGGATGAAGCTAGAATACATTGTTCGCGGAGAGCAAGGGAATCTTCTTGAACTCATT 717
Query 537 CAGAGGATTGCAACAACTGAAGGGATTAGAGGCTTTTGGAAAGGGAATTTGGTTAATATT 596
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 CAGAGGATTGCAACAAATGAAGGGATTAGAGGATTTTGGAAAGGGAATTTGGTTAATATT 777
Query 597 CTCAGAACTGCTCCTTTTAAGTCCATCAACTTCTATGCATATGATACATATAGAGGCCAG 656
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 778 CTCAGAACTGCTCCCTTTAAGTCCATCAACTTCTATGCATATGATACATATAGAGGTCAG 837
Query 657 CTTCTGAAATTATCCGGGAACGAAGAAACTACAAATTTCGAGAGGTTTGTTGCTGGTGCA 716
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 838 CTTCTGAAATTGTCCGGGAATGAAGAAACGACAAATTTCGAGAGGTTTGTTGCTGGTGCA 897
Query 717 GCTGCCGGAGTAACAGCTAGTTTACTTTGTCTACCACTTGATACCATAAGAACGGTTATG 776
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 898 GCTGCCGGAGTAACAGCTAGTTTGCTTTGTCTACCACTTGATACTATAAGAACGGTTATG 957
Query 777 GTGGCACCTGGGGGAGAGGCATTAGGTGGTGTAGTTGGTGCATTCCGTCACATGATTCAA 836
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GTGGCACCCGGTGGAGAAGCATTAGGTGGTGTAGTTGGTGCATTCCGTCACATGATTCAA 1017
Query 837 ACCGAAGGTTTCTTTTCCCTATACAAAGGTCTTGTACCTTCACTTGTTAGTATGGCTCCA 896
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACTGAAGGTTTCTTTTCCCTATACAAAGGTCTTGTACCTTCACTTGTTAGTATGGCTCCA 1077
Query 897 TCGGGAGCTGTGTTCTACGGTGTCTATGATATTTTAAAATCAGCTTACCTTCATACACCG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCGGGAGCTGTGTTCTACGGTGTCTATGATATTTTAAAATCAGCTTACCTTCATACACCG 1137
Query 957 GAAGGTAAGAAACGGCTTGAACACATGAAACAAGAAGGTGAAGAACTTAACGCTTTCGAT 1016
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1138 GAAGGTAAGAAACGGCTTGAACACATGAAGCAAGAAGGTGAAGAACTTAATGCTTTCGAT 1197
Query 1017 CAACTCGAGCTTGGTCCCATGAGAACTTTGTTATATGGAGCAATCGCAGGGGCTTGCTCA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAACTCGAGCTTGGTCCCATGAGAACTTTGTTATATGGAGCAATCGCAGGGGCTTGCTCA 1257
Query 1077 GAAGCAGCGACTTATCCGTTTGAAGTTGTGAGAAGGCGTTTACAAATGCAGTCACATGCG 1136
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GAAGCAGCAACATATCCGTTTGAAGTTGTGAGAAGGCGTTTACAAATGCAGTCACATGCT 1317
Query 1137 AAAAAGTTAAGCGCTGTGGCTACTTGTGTGAAGATCATTGAACAAGGAGGTGTTCCTGCT 1196
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAAAGGTTAAGCGCAGTGGCTACTTGTGTGAAGATCATTGAACAAGGAGGTGTTCCTGCT 1377
Query 1197 CTATATGCTGGCTTGATTCCCAGCTTATTGCAGGTTTTGCCTTCCGCGGCGATCAGTTAC 1256
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1378 CTATATGCTGGCTTGATTCCCAGCTTATTGCAGGTTTTGCCTTCCGCGGCAATCAGTTAC 1437
Query 1257 TTTGTTTACGAGTTCATGAAAGTTGTTCTGAAAGTAGAATCA---GCATAAGACAGGAAA 1313
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1438 TTTGTTTACGAGTTCATGAAAGTTGTTCTGAAAGTAGAATCATCCGCATAAGACAATAA- 1496
Query 1314 GCTATGAGAAA 1324
|| ||||||||
Sbjct 1497 GCAATGAGAAA 1507
> AT5G64960.1 | Symbols: CDKC2, CDKC;2 | cyclin dependent kinase
group C2 | chr5:25955381-25958995 FORWARD LENGTH=2135
Length=2135
Score = 163 bits (88), Expect = 4e-39
Identities = 111/121 (92%), Gaps = 6/121 (5%)
Strand=Plus/Minus
Query 1207 GCTTGATTCCCAGCTTATTGCAGGTTTTGCCTTCCGCGGCGATCAGTTACTTTGTTTACG 1266
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2135 GCTTGATTCCCAG--TATTGCAGGTTTTGCCTTCCGCGGCAATCAGTTACTTTGTTTACG 2078
Query 1267 AGTTCATGAAAGTTGTTCTGAAAGTAGAATCA---GCATAAGACAGGAAAGCTATGAGAA 1323
|||||||||||||||||||||||||||||||| |||||||||| || || |||||||
Sbjct 2077 AGTTCATGAAAGTTGTTCTGAAAGTAGAATCATCCGCATAAGACAATAA-GCAATGAGAA 2019
Query 1324 A 1324
|
Sbjct 2018 A 2018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65160307410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5