BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951350
Length=2110
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65110.1 | Symbols: ACX2, ATACX2 | acyl-CoA oxidase 2 | chr5... 3411 0.0
> AT5G65110.1 | Symbols: ACX2, ATACX2 | acyl-CoA oxidase 2 | chr5:26009635-26012514
REVERSE LENGTH=2297
Length=2297
Score = 3411 bits (1847), Expect = 0.0
Identities = 2027/2114 (96%), Gaps = 12/2114 (1%)
Strand=Plus/Plus
Query 8 TCAACTCGTTGAAATGGAATCGCGGCGAGAGAAGAATCTGATGGCGGAGGAGGAATCTGA 67
||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 20 TCAACTCATTGAAATGGAATCGCGGCGAGAGAAGAATCCGATGACGGAGGAGGAATCTGA 79
Query 68 TGGCCTAATTGCGGCGAGGCGGATCCAACGATTGTCCTTACACATTTCTCCCTCCTTGAC 127
||| |||||||||||||||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 80 TGGGCTAATTGCGGCGAGGCGGATCCAACGATTGTCTTTACACCTATCTCCCTCCTTGAC 139
Query 128 G-C--CG-C--C---ACCGTTGCTGCAGACGGAGACGTGTTCGGCGAGGTCGAAGAAGCT 178
| | || | | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 140 GCCGTCGCCGTCGTTACCGTTGGTGCAGACGGAGACGTGTTCGGCGAGGTCGAAGAAGCT 199
Query 179 GGATGTCGACGGCCAAGCTTTGGCGCTGTACATGAGGGGAAAACACATGGATATACAAGA 238
||||||| ||||| |||||||| ||||||| ||||| |||||||| || |||||||||||
Sbjct 200 GGATGTCAACGGCGAAGCTTTGTCGCTGTATATGAGAGGAAAACATATAGATATACAAGA 259
Query 239 GAAAATTTTCGACTTCTTCAATTCCCGCCCCGATTTGCAGACGCCGATCGAGATCTCGAA 298
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 260 GAAAATTTTCGACTTTTTCAATTCCCGACCCGATTTGCAGACGCCGATCGAGATCTCCAA 319
Query 299 GGACGATCATCGGGAATTGTGTATGAATCAGCTTTTAGGGCTTGTGAGAGAAGC-GGGGA 357
||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct 320 GGATGATCATCGGGAATTGTGTATGAATCAGCTTATAGGGCTTGTTAGAGAAGCTGGGG- 378
Query 358 TAAGGCCCTTTAGGTATGTTGCTGATGATCCGGAGAAATATTTCGCAATCATGGAAGCTG 417
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 379 TAAGGCCGTTTAGGTATGTTGCTGATGATCCTGAGAAGTATTTCGCAATCATGGAAGCTG 438
Query 418 TTGGAAGTGTTGATATGTCCCTTGGGATTAAGATGGGCGTTCAATACAGTCTCTGGGGAG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TTGGAAGTGTTGATATGTCCCTTGGGATTAAGATGGGCGTTCAATACAGTCTCTGGGGAG 498
Query 478 GCTCTGTGATCAATTTAGGAACCAAGAAGCATAGAGACAAGTATTTTGATGGCATTGACA 537
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 499 GCTCTGTGATCAATTTAGGGACTAAGAAGCATAGAGACAAGTATTTTGATGGCATTGACA 558
Query 538 ATCTTGATTACACCGGTTGCTTTGCCATGACTGAATTACACCATGGTTCAAATGTGCAAG 597
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 559 ATCTTGATTACACCGGTTGCTTTGCCATGACTGAATTACACCATGGGTCAAATGTGCAAG 618
Query 598 GTCTTCAGACCACGGCAACATTCGATCCACTTAAAGACGAATTTGTTATCGACACACCTC 657
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 619 GTCTTCAGACCACGGCGACATTCGATCCACTTAAAGACGAATTTGTGATCGATACACCTA 678
Query 658 ATGATGGAGCTATCAAATGGTGGATTGGAAATGCTGCTGTTCATGGGAAGTTTGCCACTG 717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 679 ATGATGGAGCTATCAAATGGTGGATTGGAAATGCTGCAGTTCATGGGAAGTTTGCCACTG 738
Query 718 TTTTTGCCAGGCTTATCCTTCCAACTCATGATTCCAAAGGAGTCTCGGATATGGGTGTTC 777
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TTTTTGCCAGGCTTATACTTCCAACTCATGATTCCAAAGGAGTCTCGGATATGGGTGTTC 798
Query 778 ACGCCTTCATTGTTCCGATAAGGGATATGAAAACACACCAGACGCTCCCTGGTGTTGAAA 837
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 799 ACGCCTTCATTGTTCCGATAAGGGATATGAAAACACACCAGACACTCCCTGGTGTTGAAA 858
Query 838 TCCAAGATTGTGGACATAAAGTGGGACTTAATGGAGTGGATAATGGTGCATTGAGATTCC 897
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 859 TCCAAGATTGTGGACATAAAGTGGGACTTAATGGAGTGGATAATGGTGCGTTGAGATTCC 918
Query 898 GTTCTGTGAGAATACCCCGTGATAATCTTCTCAATCGTTTTGGAGATGTTTCCCGAGATG 957
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 919 GTTCTGTGAGAATACCCCGTGATAATCTTCTCAATCGTTTTGGAGATGTGTCCCGAGATG 978
Query 958 GGACGTATACAAGTAGTTTGCCAACAATCAATAAAAGATTTGGGGCAACACTCGGTGAGC 1017
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 979 GGACGTATACAAGTAGTTTGCCAACAATCAATAAAAGATTTGGTGCAACACTCGGTGAGC 1038
Query 1018 TTGTAGGTGGTCGAGTTGGCCTTGCCTATGCATCTGTTGGCGTCCTTAAAATCTCTGCAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TTGTAGGTGGTCGAGTTGGCCTTGCCTATGCATCTGTTGGCGTCCTTAAAATCTCTGCAA 1098
Query 1078 CGATTGCCATTCGTTATTCGCTTCTAAGACAACAATTCGGTCCTCCAAAGCAACCTGAGG 1137
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1099 CGATTGCCATTCGTTATTCTCTTCTAAGACAACAATTCGGGCCTCCAAAGCAACCTGAGG 1158
Query 1138 TCAGTATTCTCGATTACCAGTCTCAACAGCACAAGCTCATGCCGATGTTAGCCTCGACCT 1197
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1159 TCAGTATTCTCGATTACCAGTCTCAACAACACAAGCTCATGCCGATGTTAGCCTCCACCT 1218
Query 1198 ATGCATACCATTTTGCAACTGTATACCTCGTGGAGAAATATTCAGAGATGAAGAAGACTC 1257
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1219 ATGCATACCATTTTGCAACTGTATACCTTGTGGAGAAATATTCAGAGATGAAGAAGACTC 1278
Query 1258 ACGATGAGCAATTGGTTGCTGATGTCCATGCACTCTCTGCTGGGCTCAAATCTTATGTAA 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1279 ACGATGAGCAATTGGTTGCTGATGTCCATGCACTCTCTGCTGGGCTCAAATCTTATGTGA 1338
Query 1318 CGTCTTACACCGCCAAGGCACTCTCGGTCTGCAGAGAAGCCTGTGGAGGGCATGGTTACG 1377
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1339 CGTCTTACACCGCCAAGGCGCTCTCGGTCTGCAGAGAAGCCTGTGGAGGTCATGGTTACG 1398
Query 1378 CAGCTGTTAACCGATTTGGAAGCTTGAGAAATGATCATGACATTTTCCAAACATTTGAAG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 CAGCTGTTAACCGATTTGGAAGCTTGAGAAATGATCATGACATTTTCCAAACATTTGAAG 1458
Query 1438 GAGACAACACTGTGCTTCTGCAACAGGTAGCTGCCGATTTATTGAAGCGTTATAAAGAAA 1497
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1459 GAGACAACACTGTACTTCTGCAACAGGTGGCTGCTGATTTATTGAAGCGTTATAAAGAAA 1518
Query 1498 AGTTCCAAGGCGGGACGTTGACAGTTACATGGAGCTACTTGAGAGAATCAATGAACACTT 1557
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 AGTTCCAAGGCGGGACATTGACAGTTACATGGAGCTACTTGAGAGAATCAATGAACACTT 1578
Query 1558 ATTTGTCTCAGCCAAATCCTGTTACAACGCGTTGGGAAGGTGAAGATCATCTAAGAGATC 1617
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1579 ATTTGTCTCAGCCAAATCCCGTTACAGCGCGTTGGGAAGGTGAAGATCATCTAAGAGATC 1638
Query 1618 CTAAATTCCAGTTAGATGCTTTCCGGTATCGAACATCGCGATTGCTACAAAATGTGGCTG 1677
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1639 CTAAATTCCAACTAGATGCTTTCCGGTATCGAACATCGCGATTGCTACAAAATGTGGCAG 1698
Query 1678 CGAGATTGCAGAAGCACTCAAAGACTCTAGGTGGCTTCGGTGCGTGGAACAGATGCTTGA 1737
|||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 1699 CGAGATTGCAGAAGCATTCAAAGACTCTTGGTGGTTTCGGGGCATGGAACAGATGCTTGA 1758
Query 1738 ATCATCTCTTGACACTTGCAGAATCTCACATTGAAACAGTCATTCTTGCCAAGTTCATCG 1797
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 ATCATCTTTTAACGCTTGCAGAATCTCACATTGAAACAGTCATTCTTGCCAAGTTCATCG 1818
Query 1798 AAGCTGTTAAAAACTGTCCGGACCCAAGTGCAAGAGCTGCTCTGAAACTAGCATGTGATC 1857
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1819 AAGCTGTTAAAAACTGCCCGGACCCAAGTGCAAAAGCTGCTCTGAAACTAGCATGTGATC 1878
Query 1858 TTTATGCATTGGATCGAATCTGGAAAGATATAGGAACGTACCGCAACGTGGATTATGTGG 1917
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1879 TTTACGCATTGGACCGAATCTGGAAAGATATAGGAACGTACCGTAACGTGGATTATGTGG 1938
Query 1918 CGCCTAACAAAGCTAAGGCGATTCATAAGCTGACAGAGTATCTGAGTTTCCAAGTAAGGA 1977
|||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 1939 CGCCTAACAAAGCTAAGGCGATTCATAAACTGACAGAGTATTTGAGTTTTCAAGTAAGGA 1998
Query 1978 ATGTGGCCAAGGAACTAGTGGATGCGTTCGAGCTACCTGATCATGTTACTCGAGCACCAA 2037
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1999 ATGTGGCCAAGGAACTAGTGGATGCGTTCGAGCTCCCTGATCATGTTACTCGAGCACCAA 2058
Query 2038 TTGCTATGCAATCCGATGCTTATTCACAGTACACTCAAGTTGTTGGATTCTAAAAACTCA 2097
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 2059 TTGCTATGCAGTCCGATGCTTATTCCCAGTATACTCAAGTTGTTGGATTCTAAAAACACA 2118
Query 2098 AGAACAAA-CATAT 2110
|||||||| |||||
Sbjct 2119 AGAACAAAACATAT 2132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104617935780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5