BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951352
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65130.1 | Symbols: | Integrase-type DNA-binding superfamil... 1077 0.0
> AT5G65130.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:26017403-26018236 FORWARD LENGTH=834
Length=834
Score = 1077 bits (583), Expect = 0.0
Identities = 774/861 (90%), Gaps = 33/861 (4%)
Strand=Plus/Plus
Query 27 ATGGCTTTAAACATGAATGGTTACATAGACGAGTTCACGAAAGCTCTTGAACCATTCATG 86
||||||||||||||||||| |||| |||||||||||| | ||||||||||||||||||||
Sbjct 1 ATGGCTTTAAACATGAATGCTTACGTAGACGAGTTCATGGAAGCTCTTGAACCATTCATG 60
Query 87 AAGGTAACTTCAtcttcttcttcttcttcttcttcttcGTATTCCTTTTCATCAAACCCA 146
|||||||||||| ||||||||| |||| ||| || | | | || ||| |||
Sbjct 61 AAGGTAACTTCA---TCTTCTTCTACTTCGAATTCATC-AAAT-C----CA--AAA-CCA 108
Query 147 AAAACT-TTAACTAC-T-AATAATAATAACCAAGCCTTACCGGAATCTAACCAAACCGGT 203
|||| ||| | | | ||||||| |||||| |||||||| ||||||||||||||||
Sbjct 109 TTAACTCCTAATTTCATCCCTAATAATGACCAAGTCTTACCGGTATCTAACCAAACCGGT 168
Query 204 CCGATTGGGCTAAACCAGCTCACTCCAACTCAAATCCTCCAAATTCAAACTGAGTTACAT 263
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 169 CCGATTGGGCTAAACCAGCTCACTCCAACACAAATCCTCCAAATTCAGACAGAGTTACAT 228
Query 264 CTCCGGCAAAACCAACCTCGTCGTCGAGCTGGTAGTCATCTTCTCACCACTAAACCAACC 323
||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 229 CTCCGGCAAAACCAATCTCGTCGTCGCGCTGGTAGTCATCTTCTCACCGCTAAACCAACC 288
Query 324 -CTAATGAAGAAAACCGACGTAGCAGCCAAACCGGTTAAACTATACCGAGGCGTAAGACA 382
| ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 289 TC-AATGAAGAAAATCGACGTAGCAACTAAACCGGTTAAACTATACCGAGGCGTAAGACA 347
Query 383 -ACGGCAATGGGGTAAATGGGTAGCTGAGATTCGGTTACCTAAAAACCGAACCCGGTTAT 441
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 348 GA-GGCAATGGGGTAAATGGGTAGCTGAGATTCGGCTACCTAAAAACCGAACCCGGTTAT 406
Query 442 GGCTCGGTACGTTCGAAACGGCCCAAGAAGCTGCATTAGCTTATGATCAAGCTGCTCATA 501
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 407 GGCTCGGTACGTTCGAAACGGCTCAAGAAGCTGCATTAGCTTACGATCAAGCAGCTCATA 466
Query 502 AGATCAGAGGAGACAACGCTCGTCTAAATTTCCCCGACATTGCTCGTCAAGGACACTATA 561
||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||
Sbjct 467 AGATCAGAGGAGACAACGCTCGTCTCAATTTCCCAGACATTGTTCGTCAAGGACACTATA 526
Query 562 AACAGACATTGTCTCCTTCTATCAACGCAAAGATCGACTCAATCTGCCATAGCTCTGATC 621
|||||| ||||||||| |||||||||||||||||||| || |||||| |||| |||||||
Sbjct 527 AACAGATATTGTCTCCGTCTATCAACGCAAAGATCGAATCCATCTGCAATAGTTCTGATC 586
Query 622 TTCCTCTTCCTCAGCTC-AGGAAACAGAACAAAACAGAGGAGGTGCTCTCTGCTTTTCAT 680
|||| || |||||| || || ||||||||||||||||||||||||||||||| |||| |
Sbjct 587 TTCCACTGCCTCAGATCGAG-AAACAGAACAAAACAGAGGAGGTGCTCTCTGGTTTT--T 643
Query 681 TATACGGGTCATGAACCGGAGCAAGAACCGGAATTTGGGGAGATATACGGATCCGGGTTT 740
| || |||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 644 ----C----CA--AACCGGAGAAAGAACCGGAATTTGGGGAGATATACGGATGCGGATAC 693
Query 741 TCGGGCTCTTCTCCTGAGTCGGATATAACGTTGTTGGATTTCTCAAGCGACTGTATGAAA 800
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 694 TCGGGCTCATCTCCTGAGTCGGATATAACGTTGTTGGATTTCTCAAGCGACTGTGTGAAA 753
Query 801 GAAGATGAGAGTTTCTTGATGGGTTTGCACAAGTATCCTTCTTTGGAGATTGATTGGGAC 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 GAAGATGAGAGTTTCTTGATGGGTTTGCACAAGTATCCTTCTTTGGAGATTGATTGGGAC 813
Query 861 GCTATAGAGAAACTCTTCTGA 881
|||||||||||||||||||||
Sbjct 814 GCTATAGAGAAACTCTTCTGA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5