BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951353
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65140.1 | Symbols: TPPJ | Haloacid dehalogenase-like hydrol... 1834 0.0
> AT5G65140.1 | Symbols: TPPJ | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:26019588-26022222 REVERSE
LENGTH=1548
Length=1548
Score = 1834 bits (993), Expect = 0.0
Identities = 1096/1146 (96%), Gaps = 6/1146 (1%)
Strand=Plus/Plus
Query 11 TTTTA-ATAAAATGGTGAGCCAAAACGTCGTCGTATCAGACGCCAAGACCGGGATCATAA 69
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TTTTATATAAAATGGTGAGCCAAAACGTCGTCGTATCAGACGCCAAGACCGGGATCATAA 194
Query 70 CGGTATCTACAGTCTCTAACTCCTCTGTCTTTACTCCTTCCGCTCAAAAACCACCGACTG 129
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 195 CGGTCTCTACAGTCTCTAACTCCTCTGTCTTTACTCCTACCGCTCAAAAACCACCGACTG 254
Query 130 CTCCTGGTTACATCTCAATCTCCAAGAAAAAACTCCTCAAAAACCTTGAAATCAATGGAG 189
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CTCCTGGTTACATCTCAGTTTCCAAGAAAAAACTCCTCAAAAACCTTGAAATCAATGGAG 314
Query 190 -T--TCAAAGTCAAAGACTCAACTCTTGGGTTGACTCCATGAGAGCTTCTTCTCCTACCC 246
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 315 CTGATCAAAGTCAAAGACTTAACTCTTGGGTTGACTCCATGAGAGCTTCTTCTCCTACCC 374
Query 247 ATCTCAAATCACTTTCTTCTTTCTCTTCCGAAGAAGAACACAATTCTTGGATCAAACGAC 306
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 ATCTCAAATCACTTTCCTCTTTCTCTTCCGAAGAAGAACACAATTCTTGGATCAAACGAC 434
Query 307 ATCCATCCGCGCTTGACATGTTCGAAAGAATCATCGAAGAAGCAAGAGGAAAACAGATCG 366
||||||| || ||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 435 ATCCATCAGCACTTAACATGTTCGAACGAATCATCGAAGAAGCAAGAGGAAAACAAATCG 494
Query 367 TCATGTTTCTTGATTATGACGGTACTCTTTCTCCGATAGTCGATGATCCAGACAGAGCCT 426
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 495 TCATGTTTCTTGATTATGACGGTACTCTTTCTCCGATCGTGGATGATCCAGACAGAGCTT 554
Query 427 TCATGACTAGCAAGATGAGAAGGACAGTGaaaaaaaTGGCCAAGTGTTTTCCAACTTCTA 486
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 555 TCATGACTAGCAAGATGAGAAGAACAGTGAAAAAAATGGCTAAGTGTTTTCCAACTTCCA 614
Query 487 TTGTTACTGGTAGATGCATAGACAAGGTTTATAGCTTTGTGAAGTTAGCAGAATTGTATT 546
| ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 615 TAGTTACTGGTAGATGCATCGACAAGGTTTATAGCTTTGTGAAGCTAGCAGAACTGTATT 674
Query 547 ATGCTGGAAGCCATGGGATGGATATTAAAGGCCCAACTAAAGGTTTCTCAAGATACAATA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 ATGCTGGAAGCCATGGGATGGATATTAAAGGCCCAACTAAAGGTTTCTCAAGATACAATA 734
Query 607 AGGATAAACCATCAGTTCTTTACCAACCAGCCGGCGACTTTCTTCCCATGATCGATGAGG 666
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 AGGATAAACCATCCGTTCTTTACCAACCAGCCGGCGACTTTCTTCCCATGATCGATGAGG 794
Query 667 TTTATAAACAATTAGTGGAGAAAACCAAATCAACACCAGGAGCCAAAGTGGAGAACAACA 726
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 795 TTTATAAACAATTAGTGGAGAAAACCAAATCTACACCAGGAGCCAAAGTGGAGAACAACA 854
Query 727 AGTTCTGTCTTTCTGTGCACTTCCGTTGTGTCGACGAGAAGAAATGGAGCGAATTGGCTT 786
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 855 AGTTCTGTCTTTCTGTGCACTTCCGTTGTGTTGACGAGAAGAAATGGAGCGAGCTGGCTT 914
Query 787 TAAAAGTTCGGTCGGTGGTCAAGAACTATCCGACGCTGAAACTGTCTCAAGGTCGAAAGG 846
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 915 CAAAAGTTCGGTCGGTGGTAAAGAACTATCCGACGTTGAAACTGTCTCAAGGTCGAAAGG 974
Query 847 TTTTTGAAATCCGACCTATGATTAAATGGGACAAAGGCAAGGCTCTTGAGTTTTTGTTAG 906
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 975 TTTTTGAAATCCGACCTATAATTAAATGGAACAAAGGCAAGGCTCTTGAGTTTTTGTTAG 1034
Query 907 AGTCACTCGGATTTGAGAACTGTAACGATGTATTTCCGATTTACATTGGCGATGATAAAA 966
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1035 AGTCACTCGGATTTGAAAACTGTAACGATGTATTTCCAATTTACATTGGTGATGATAAAA 1094
Query 967 CCGATGAAGATGCATTCAAGCTGCTACG-GGAGAGAGGACAAGGCTTTGGTATTCTTGTC 1025
|||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1095 CCGATGAAGATGCATTTAAGCTACTACGAGG-GAGAGGACAAGGCTTTGGTATTCTTGTC 1153
Query 1026 TCCAAGTTCCCCAAAGACACCAGTGCGTCGTATTCTTTGCAAGACCCACCTCAGGTGATG 1085
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1154 TCCAAGTTCCCCAAAGACACCAGTGCGTCGTATTCTTTACAAGACCCACCTGAGGTGATG 1213
Query 1086 AATTTCTTGCAACGGTTGGTGGACTGGAAACAAATGCAGCAATAAACGTGGAAGGCGCAA 1145
||||||||| |||||||||||| |||||||| ||||||||||||||||| |||| ||||
Sbjct 1214 AATTTCTTGGGACGGTTGGTGGAGTGGAAACAGATGCAGCAATAAACGTGCAAGGGGCAA 1273
Query 1146 TGAAGT 1151
||||||
Sbjct 1274 TGAAGT 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56475613125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5