BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951366

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65220.1 | Symbols:  | Ribosomal L29 family protein  | chr5:...   876    0.0  


> AT5G65220.1 | Symbols:  | Ribosomal L29 family protein  | chr5:26061229-26062682 
FORWARD LENGTH=770
Length=770

 Score =  876 bits (474),  Expect = 0.0
 Identities = 536/565 (95%), Gaps = 8/565 (1%)
 Strand=Plus/Plus

Query  1    TCTTCTTCTTCCGCCATAGCTACAATGCTTAGTCTCTCAATTGCTACGCCGGGTG-CGGC  59
            |||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct  49   TCTTCTTCCTCCGCCATAGCTACAATGCTTAGTCTCTCAATCGCTACGCCGGG-GACGGC  107

Query  60   GGCGATTTTCCGTCGAGGAACAGCTTCCGG-GACTTCAACTTCGTCTTCTTTCCATGGAG  118
            ||||||||| ||| ||||||| |||| ||| |||||||||||||||||| |||||||| |
Sbjct  108  GGCGATTTTTCGTAGAGGAACTGCTT-CGGCGACTTCAACTTCGTCTTCATTCCATGGTG  166

Query  119  TCAGAATCCAGCAACAGGTCTCTGCTCGCGTCCCCGCGGCGGCGACGAT-T--TCGTCGT  175
            ||||||||||||| ||||| ||||||||||||||||||||||||||||| |  |||||||
Sbjct  167  TCAGAATCCAGCACCAGGTTTCTGCTCGCGTCCCCGCGGCGGCGACGATATCGTCGTCGT  226

Query  176  CTCGTAAACCGTCGGTGGTGATGATGTCGAAAAGAGAGGCGGAATTGAAAGAGATAAGAT  235
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  227  CTCCTAAACCGTCGGTGGTGATGATGTCGAAAAGAGAGGCGGAATTGAAAGAGATAAGAT  286

Query  236  CAAAGACGACGGAGCAGTTACAAGAGGAGGTTGTTGACCTTAAAGGAGAGCTCTTTATGC  295
            | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  287  CGAAGACGACGGAGCAGTTACAAGAGGAGGTTGTTGACCTTAAAGGTGAGCTCTTTATGC  346

Query  296  TTCGTCTCCAGAAATCGGCAAGGAATGAGTTCAAATCTAGCGACTTTCGTCGTATGAAGA  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  347  TTCGTCTCCAGAAATCGGCAAGGAATGAGTTCAAATCTAGCGACTTTCGTCGTATGAAGA  406

Query  356  AACAAGTTGCCCGGATGTTGACGGTAAAAAGAGAGAGGGAGATCAAAGAAGGGATAAAGA  415
            |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  407  AACAAGTTGCTCGGATGTTGACGGTTAAAAGAGAGAGGGAGATCAAAGAAGGGATAAAGA  466

Query  416  AAAGGTTGTCGAGGAAACTTGACCGACAATGGAAGAAAAGCATTGTACCGAGACCACCTC  475
            ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct  467  AAAGGTTGTCGAGGAAACTTGACAGACAATGGAAGAAAAGCATAGTACCAAGACCACCTC  526

Query  476  CTTCTCTgaagaagcttcaagaagaagaagctgcagaagaagcagctgaagctGCCAAAT  535
            | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  527  CGTCTCTGAAGAAACTTCAAGAAGAAGAAGCTGCAGAAGAAGCAGCTGAAGCTGCTAAAT  586

Query  536  CTGCTTGAAAAAACC-GCCATTGAT  559
            ||||||||||||||| || ||||||
Sbjct  587  CTGCTTGAAAAAACCCGCTATTGAT  611



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5