BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951370
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1125 0.0
> AT5G65260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:26080231-26083017 REVERSE LENGTH=966
Length=966
Score = 1125 bits (609), Expect = 0.0
Identities = 671/701 (96%), Gaps = 3/701 (0%)
Strand=Plus/Plus
Query 7 AGAGAGAGAGCGACGATGGAGGAAGAGGAGCATGAGGTTTACGGTGGAGAAATTCCCGAC 66
|||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 19 AGAGCGAGAGAGACGATGGAGGAAGAGGAGCACGAGGTTTACGGTGGTGAAATTCCAGAC 78
Query 67 GTCGGCGAGATGGATGGAGATATGGAGGCTCTTAATCCCGATTTGGATATGGCTGCCGCC 126
||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 79 GTCGGAGAGATGGATGGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTGCTGCT 138
Query 127 GATGATGATGCGGTTAAGGAGTTGGATGAGATGAAGAAACGATTGAAGGAGATGGAGGAT 186
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 139 GATGATGATGCGGTTAAGGAGTTGGATGAAATGAAGAAACGATTGAAAGAGATGGAGGAC 198
Query 187 GAAGCTGCTGCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCCCAAGAT 246
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 199 GAAGCTGCTGCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCTCAAGAT 258
Query 247 CCTGCTAGTATTGCAGCAAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTT 306
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CCTGCTAGTATTGCAGCGAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTT 318
Query 307 GTTGGCAATGTTGATTACGCTTGCACACCTGAAGAAGTTCAGCAGCATTTCCAAACATGC 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GTTGGCAATGTTGATTACGCTTGCACACCTGAAGAAGTTCAGCAGCATTTCCAAACATGC 378
Query 367 GGCACTGTCCATCGGGTGACCATTCTAACAGACAAATTCGGGCAGCCAAAGGGATTTGCT 426
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 379 GGCACTGTCCATCGGGTGACCATTCTGACAGACAAATTCGGGCAGCCAAAGGGATTTGCA 438
Query 427 TATGTAGAATTTGTTGAAGTGGAAGCTGTACAAGAGGCTCTACAACTGAATGAATCAGAG 486
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 439 TATGTAGAATTCGTCGAAGTGGAAGCTGTTCAAGAGGCTCTACAACTGAATGAATCAGAG 498
Query 487 CTACATGGTCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CTACATGGTCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAG 558
Query 547 TTTCGTGGTAGACGATTCAACCCATACATGGGTTACCGGTTCCGCAGACCTTTCATGCCT 606
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 559 TTCCGTGGTAGACGATTCAATCCATACATGGGTTACCGGTTCCGCAGACCTTTCATGTCT 618
Query 607 CCTTACATGTATTCTCCATATGGATATGGAAAAGCTCCTAGGTTCAGAAGGCCTATGCGT 666
||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 619 CCTTATATGTATTCCCCATATGGATACGGAAAAGCTCCTAGGTTTAGAAGGCCTATGCGT 678
Query 667 TACATGCCGTACCAATAAAACCGTCAT---GGTTAAGCATA 704
||||||||||||||||||||||||||| |||||||||||
Sbjct 679 TACATGCCGTACCAATAAAACCGTCATCATGGTTAAGCATA 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5