BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951371
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65270.1 | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog A4... 1192 0.0
> AT5G65270.1 | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog
A4A | chr5:26083328-26084714 FORWARD LENGTH=954
Length=954
Score = 1192 bits (645), Expect = 0.0
Identities = 696/721 (97%), Gaps = 1/721 (0%)
Strand=Plus/Plus
Query 1 GAGAGAGAGAGGTTGAAGAAGATGACTAGTGGAGGAGGATACGGAGATCCGTCGCAGAAG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 GAGAGAGAGACGTTGAAGAAGATGACTAGTGGAGGAGGATACGGAGATCCGTCGCAGAAG 148
Query 61 ATTGATTATGTGTTCAAAGTGGTGTTGATCGGCGATTCAGCGGTTGGGAAATCGCAGATA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 149 ATTGATTATGTGTTCAAAGTGGTGTTGATCGGCGATTCCGCGGTTGGGAAATCACAGATA 208
Query 121 CTAGCTCGTTATGCGAGAGACGAGTTTAGTTTGGATTCTAAGGCCACCATCGGCGTTGAG 180
|| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 209 CTGGCTCGTTATGCTAGAGACGAATTCAGTTTGGATTCTAAGGCCACCATCGGCGTTGAG 268
Query 181 TTTCAGACTCGGACGCTTGTTATCGATCACAAGAGTGTTAAGGCTCAGATCTGGGATACC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TTTCAGACTCGGACGCTTGTTATCGATCACAAGAGTGTTAAGGCTCAGATCTGGGATACC 328
Query 241 GCCGGCCAAGAACGATACAGAGCTGTAACGAGTGCATATTACCGAGGAGCGGTTGGGGCG 300
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 329 GCCGGCCAAGAACGATACAGAGCAGTAACAAGTGCATATTACCGAGGAGCGGTTGGGGCG 388
Query 301 ATGTTGGTGTATGACATAACCAGACGCCAAACCTTTGACCATATACCAAGATGGCTAGAA 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 389 ATGTTGGTGTATGACATAACCAGACGCCAAACCTTTGACCATATCCCAAGATGGTTAGAA 448
Query 361 GAATTGCGTGCTCATGCAGACAAGAACATTGTGATCATCCTTATTGGGAACAAGTCAGAT 420
||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 449 GAACTACGTGCTCATGCAGATAAGAACATTGTGATAATCCTTATTGGGAACAAGTCAGAT 508
Query 421 CTTGTGGATCAACGAGCTATACCGACTGAAGATGCTAGAGAGTTTGCGGAGAAAGAAGGT 480
|||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||
Sbjct 509 CTTGTGGATCAACGAGCTATACCGACAGAAGATGCGAAAGAATTTGCGGAGAAAGAAGGT 568
Query 481 TTATTCTTCTTGGAGACATCTGCATTTAACGCAACTAATGTTGAGAGCGCTTTCTCCACG 540
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 569 TTGTTCTTCTTGGAGACATCTGCATTTAACGCAACCAATGTTGAGAGCGCTTTCTCCACG 628
Query 541 GTTTTGACTGAGATCTTCAACATTGTGAACAAGAAAAGTCTTGCCGCGAGTGAAGATCAA 600
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 629 GTTTTGACTGAGATCTTCAACATTGTGAACAAGAAAAGTCTGGCTGCGAGTGAAGATCAA 688
Query 601 GAGAACGGTAATCCCGGGTCGCTTGCTGGTAAGAAGATTGATATTGTTCCAGGTCCTGGT 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GAGAATGGTAATCCCGGGTCGCTTGCTGGTAAGAAGATTGATATTGTTCCAGGTCCTGGT 748
Query 661 CAAGTGATACCAAACAAGAGTAACATGTGTTGTAACTCTTAGATAA-CCAATTCAATTCT 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 749 CAAGTGATACCAAACAAGAGTAACATGTGTTGTAACTCTTAGATAAACCAATTCAATTCT 808
Query 720 T 720
|
Sbjct 809 T 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35013200459
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5