BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951380
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65340.1 | Symbols: | Protein of unknown function, DUF617 |... 1179 0.0
> AT5G65340.1 | Symbols: | Protein of unknown function, DUF617
| chr5:26113398-26114489 REVERSE LENGTH=1092
Length=1092
Score = 1179 bits (638), Expect = 0.0
Identities = 752/806 (93%), Gaps = 12/806 (1%)
Strand=Plus/Plus
Query 5 AACTCCC--aaaaaaaCCATGT---CCTTCCCCACAAACCCTCACCGTCGCCGGCTTGCC 59
||||||| ||||||||||||| ||||||||||||||||| |||||||||| || ||
Sbjct 27 AACTCCCAAAAAAAAACCATGTCCGCCTTCCCCACAAACCCTTACCGTCGCCGCCTAGCT 86
Query 60 TCAACCACCACAAGCGCAACCGCAGCCGTAGACTGCCATAAACAAGTTCGTTCATGGCGG 119
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 87 TCAACCACCACAAGCGCAACGGTAGCCGTAGACTGCCATAAACAAGTTCGTTCATGGCGG 146
Query 120 CTCCTTCGAACCATCGTCCAACTTCTCATCCCATCTTGTTACTGCACAATCATTGATCCA 179
|||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 147 CTCCTTCGCACCATCGCCCAACTTCTCATCCCATCTTGTTACTGCACAATCGTCGATCCA 206
Query 180 AATGATATTCATGAAGACAAATTATCTCACCGCCAAATCAAACCAAGAACCTCTTCCGTC 239
||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 207 AATGATAGTCAAGAAGACAAATTATCTCACCGCCAAATTAAACCAAGAACCTCTTCCGCC 266
Query 240 TCTTCAACCGCCATAAACTCCAGTTTTACTGGAACCATATTCGGTTTCCGCCGTGGCAAA 299
|| |||||||||| |||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct 267 TCCTCAACCGCCACAAACTCCACTTTTACCGGAACCATATTCGGTTTCCGTCGTGGCAAA 326
Query 300 GTAAACTTTTGCATCCAAGCAACAAACTCGAAAACACTAAACCCAATCATTGTCCTCTTA 359
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 327 GTAAACTTCTGCATCCAAGCAACAAACTCCAAAACCCTAAACCCAATCATTGTCCTCTTA 386
Query 360 GAGCTTATTGTCCCTACTGAGGTATTAGCCCGCGAAATGGGAGGAGGCGTGCTAAGGATC 419
||||| | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 387 GAGCTCACTGTCCCTACCGAGGTATTAGCCCGCGAAATGCAAGGAGGCGTGCTCAGGATC 446
Query 420 GCTCTCGAATCAAACAATAACGAGGGATATGGTTCACATGAAGAttcttcttcttcttca 479
||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||
Sbjct 447 GCTCTCGAATCAAACAATAACGACGGATATGATTCACATGAAGATTCTTC--C-TCTTCA 503
Query 480 cttcttACAACACCTTTATGGAACATGTATTGCAACGGTCGGAAAGTTGGATTCGCCATC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CTTCTTACAACACCTTTATGGAACATGTATTGCAACGGTCGGAAAGTTGGATTCGCCATC 563
Query 540 AAACGACAGCCTTCCAAAG-CTGAGCTCGCCGCGTTGAAGGTGCTTACCCCGGTGGCTGA 598
|||||| |||||| | ||| ||||||| || ||||||||||||||||| |||||||||||
Sbjct 564 AAACGAGAGCCTT-CGAAGTCTGAGCTAGCTGCGTTGAAGGTGCTTACTCCGGTGGCTGA 622
Query 599 AGGAGCCGGAGTTGTTAACGGAGAAGAGATAAACCGAGAGAAAAGTGATCATATGATGTA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AGGAGCCGGAGTTGTTAACGGAGAAGAGATAAACCGAGAGAAAAGTGATCATATGATGTA 682
Query 659 CTTAAGAGCGAGTTTCAAACGAGTTTTTGGTTCGTTTGATTCGGAATCTTTTCATCTCGT 718
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 683 CTTAAGAGCGAGTTTCAAACGAGTTTTTGGTTCGTTTGATTCGGAATCTTTCCATCTCGT 742
Query 719 TGACCCTCGCGGGATTATCGGACAAGAACTAAGTATCTTCTTTTTTAGATCGTCAAGAAA 778
|||||| || ||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 743 TGACCCACGTGGGATTATCGGTCAAGAACTAAGTATCTTCTTTTCTAGATCGTCAA-AAA 801
Query 779 -ATGATCTTGAATCGTTTTGTATGTT 803
||||||||| |||||||||| ||||
Sbjct 802 GATGATCTTGGATCGTTTTGTGTGTT 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39082166366
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5