BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951383

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65390.1 | Symbols: AGP7 | arabinogalactan protein 7 | chr5:...   494    3e-139


> AT5G65390.1 | Symbols: AGP7 | arabinogalactan protein 7 | chr5:26128584-26129338 
REVERSE LENGTH=755
Length=755

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 383/436 (88%), Gaps = 19/436 (4%)
 Strand=Plus/Plus

Query  1    TCTTTAGATAGAGAACAAAAAATGAATTCGAAGATCTTTGAAGCTTTCTTCATTGTTGCT  60
            |||||||| ||||   |||||||||||||||||||| | |||||||||||||| ||||||
Sbjct  43   TCTTTAGAGAGAGTGGAAAAAATGAATTCGAAGATCATCGAAGCTTTCTTCATCGTTGCT  102

Query  61   CTCTTCACTACCTCATGCCTCGCTCAAGCTCCAGCTCCTTCTCCAACCACCACCGTCA--  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  103  CTCTTCACTACCTCATGCCTCGCTCAAGCTCCAGCTCCTTCTCCAACCACCACCGTCACT  162

Query  119  -CTCCT-CC---G------C-CC-CCTGCCGCAACTCCCTCTCCGACCACCACTCCACCA  165
             ||||| ||   |      | || || |||||||||||| ||||||||||||||||||||
Sbjct  163  CCTCCTCCCGTTGCCACTCCACCACCCGCCGCAACTCCCGCTCCGACCACCACTCCACCA  222

Query  166  CCTGCAGCCACCCCTGCCCCTACCGCTACTCCTCCGTCTTCCTCTCCTTCTCCGTCGTCT  225
            ||||| | | |||||||||| ||| || |||||||||||||  |||||||||||||||||
Sbjct  223  CCTGCCGTCTCCCCTGCCCCCACCTCTTCTCCTCCGTCTTCAGCTCCTTCTCCGTCGTCT  282

Query  226  GATGTCCCC-ACCGCTTCTCCACCTGCACCGGAAGGTCCCGGAGTTAGTCCCGGTGATCT  284
            |||| |||| |||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct  283  GATG-CCCCTACCGCTTCTCCACCTGCACCGGAAGGTCCCGGAGTTAGCCCCGGCGAACT  341

Query  285  ATCCCCGACACCTTCTGACGCTGCCGCTCCTCCACCTAACGCAGCTTTCTCCAACAAAGC  344
            | ||||||||||||| || ||| ||||||||||||||||||| |||||  ||||||||||
Sbjct  342  AGCCCCGACACCTTCCGATGCTTCCGCTCCTCCACCTAACGCCGCTTTAACCAACAAAGC  401

Query  345  TTTCGTCGTCGGTAC-CGTTTTTGCGGCGGTTATTTCCGCCGTCGTTTTGGCTTAGGATC  403
            ||||||||||||| | | || | || ||| |||||| ||||||||| |||||||||||||
Sbjct  402  TTTCGTCGTCGGTTCAC-TTGTCGCCGCGATTATTTACGCCGTCGTGTTGGCTTAGGATC  460

Query  404  TCATTGTTTACATCTT  419
            ||||||||||||||||
Sbjct  461  TCATTGTTTACATCTT  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5