BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951385
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65410.1 | Symbols: ATHB25, ZFHD2, HB25, ZHD1 | homeobox pro... 1567 0.0
> AT5G65410.1 | Symbols: ATHB25, ZFHD2, HB25, ZHD1 | homeobox protein
25 | chr5:26136094-26137183 FORWARD LENGTH=1090
Length=1090
Score = 1567 bits (848), Expect = 0.0
Identities = 939/982 (96%), Gaps = 9/982 (1%)
Strand=Plus/Plus
Query 1 TTTCACATTTCTCCACTTCTTTAATGGAGTTTGAAG------ACAACAACAACGACGAAG 54
||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 63 TTTCACATTTCTCGACTTCTTGAATGGAGTTTGAAGACAACAACAACAACAACGACGAAG 122
Query 55 AGCAAGAAGAGGATATGAATCTTCACGAGGAAGAAGAAGACGACGACGCCGTTTACGAct 114
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 123 AGCAAGAAGAGGATATGAATCTTCATGAGGAAGAAGAAGACGACGACGCCGTTTACGACT 182
Query 115 ctcctcctctctctcGCGTTGTCCCCAAAGCCTCGACAGAAAGTCATGAACCCACCGGAA 174
|||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 183 CTCCTCCTCTCTCTCGTGTTCTCCCCAAAGCCTCGACAGAAAGTCATGAAACCACCGGAA 242
Query 175 CAACCTCCACAGGCGGTGGTGGAGGATTCATGGTTGTTCACGGTGGTGGAGGAAGCAGGT 234
| || |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 243 CTACTTCCACAGGCGGTGGCGGAGGATTCATGGTTGTTCACGGCGGTGGAGGGAGCAGGT 302
Query 235 TTAGGTTCCGTGAGTGTCTCAAGAACCAAGCGGTGAACATAGGAGGACACGCGGTGGATG 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 303 TTAGGTTCCGTGAGTGTCTCAAGAACCAAGCGGTGAACATAGGAGGACACGCGGTCGATG 362
Query 295 GCTGTGGTGAGTTTATGCCAGCTGGAATCGAAGGTACCATCGACGCGCTAAAATGCGCCG 354
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 363 GTTGTGGTGAGTTTATGCCAGCTGGAATCGAAGGTACCATCGACGCTCTAAAATGCGCCG 422
Query 355 CTTGTGGCTGTCACCGTAACTTCCACCGCAAGGAATTACCTTACTTCCACCACGCGCCGC 414
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 423 CTTGTGGCTGTCACCGTAACTTCCACCGCAAGGAATTACCTTACTTCCATCACGCGCCGC 482
Query 415 CACAACATCAGCCTCCTCCTCCTCCGCCAGGTTTTTACCGTCTTCCAGCTCCGGTAAGCT 474
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 483 CACAACATCAGCCTCCTCCTCCCCCGCCAGGGTTTTACCGTCTTCCAGCTCCGGTTAGCT 542
Query 475 ACCGACCACCACCGTCACAAGCTCCTCCGCTTCAGCTCGCTCTTCCTCCTCCACAAAGAG 534
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 543 ACCGACCACCACCGTCACAAGCTCCTCCTCTTCAGCTCGCTCTTCCCCCTCCACAAAGAG 602
Query 535 AGAGATCAGAAGATCCAATGGATACTTCTTCTGCTGAAGCAGGAGGAGGAGGGATTAGGA 594
|||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct 603 AGAGATCAGAAGATCCAATGGAGACGTCTTCAGCTGAAGC---AGGAGGAGGGATTAGGA 659
Query 595 AGAGGTATAGGACTAAGTTCACGGCTGAGCAAAAGGAGAGGATGTTAGCTTTAGCTGAGA 654
||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 AGAGGCATAGGACTAAGTTTACGGCTGAGCAAAAGGAAAGGATGTTAGCTTTAGCTGAGA 719
Query 655 GGATTGGATGGAGAATTCAGAGACAAGACGATGAAGTGATTCAAAGATTTTGTCAGGAGA 714
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 GGATTGGATGGAGAATTCAGAGACAAGACGATGAAGTGATTCAGAGATTTTGTCAGGAGA 779
Query 715 CTGGTGTTCCCAGACAAGTTCTTAAGGTTTGGTTACATAACAACAAACACACTCTTGGTA 774
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTGGTGTTCCGAGACAAGTTCTTAAGGTTTGGTTACATAACAACAAACACACTCTTGGTA 839
Query 775 AGTCGCCATCACCACTTCATCATCACCAGCCTCCTCCTCCTCCACCACCACAGTCTTCGT 834
||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 840 AGTCGCCTTCACCACTTCATCATCATCAGGCTCCTCCTCCTCCACCACCACAGTCTTCGT 899
Query 835 TTCATCATGAACAAGACCAACCATGAATCTTGAATTTCTTTGATCACTAGGGTTTTAATT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTCATCATGAACAAGACCAACCATGAATCTTGAATTTCTTTGATCACTAGGGTTTTAATT 959
Query 895 TAGCTTAATTAATTACTTGAGAAATTTGAGAGAGAAGGTTTTTATTGTTTAATTTATGTA 954
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 960 TAGCTTAATTAATTACTTGAGAAATTTGAGAGACAAGGTTTTTATTGTTTAATTTATGTA 1019
Query 955 CCCATTCTCGTCTTTGATGATG 976
|||||| || ||||||||||||
Sbjct 1020 CCCATTTTCCTCTTTGATGATG 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5