BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951394

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65480.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   765    0.0  


> AT5G65480.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; 
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G38060.2); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:26176021-26177917 FORWARD LENGTH=1199
Length=1199

 Score =  765 bits (414),  Expect = 0.0
 Identities = 475/502 (95%), Gaps = 13/502 (3%)
 Strand=Plus/Plus

Query  4    AAGGAAACAGaaaaaaaGATGGCAGTCTCTTTTCCTCGTCTTCCGAGGTGGTTGTGTGGT  63
            |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  AAGGAAACATTAAAAAAGATGGCAGTCTCTTTTCCTCGTCTTCCGAGGTGGTTGTGTGGT  296

Query  64   -G--GTAACACTAAagagagagagaagaaagagTCAATGT-CTAAAGGATCTTCTTCGCT  119
             |  ||||||||||||| |||||||||||||||||||| | |||||||||||||||| ||
Sbjct  297  GGTAGTAACACTAAAGATAGAGAGAAGAAAGAGTCAAT-TCCTAAAGGATCTTCTTCACT  355

Query  120  GAGTCCTTCACTGAAGAAGACTACTAC---TAAGACTGGCTCTTCCTCTTCATCGGTgaa  176
             ||||||||||||||||||||||||||   ||||||||| |||||||||||||| |||||
Sbjct  356  TAGTCCTTCACTGAAGAAGACTACTACTAGTAAGACTGGTTCTTCCTCTTCATCAGTGAA  415

Query  177  gaagaccaagagaggatggattggaagaggaggatcaggatcagga---gaagaggataa  233
            ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct  416  GAAGACCAAGAGAGGATGGATTGGAAGAGGAGGATCAGGATCAGGAGGGGAAGAGGATAA  475

Query  234  gatggggaATGTGGTGTTTCCTGAACCAGATGATCCAGAGTGGTCAATTGGTTGGGTTGA  293
            ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  476  GATTGGGAATGTGGTGTTTCCTGAACCTGATGATCCAGAGTGGTCAATTGGTTGGGTTGA  535

Query  294  GCCACATGGACCAGGTTTTAAAACTCAGGAGGATGATTGTGGTGGCTTTGTGGTTTTGGT  353
            |||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct  536  GCCACATGGACCAGGTTTTAAAGCTGAGGATGATGATTGTGGTGGCTTTGTGGTTTTGGT  595

Query  354  TCCTCTTTACAAGAAAGTGT-TGGATGGTTCAGGGAATCAGATTCCAAATGGCTTCTTCT  412
            |||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct  596  TCCTCTTTACAAGAAAGT-TATGGATGGTTCAGGGAATCAGATTCCGAATGGCTTCTTCT  654

Query  413  CTCCTGCTGCTCCTGATGGGAAGAACATGGAACAGTGGCTGTCGTCTATGGGGAAGCTAT  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  655  CTCCTGCTGCTCCTGATGGGAAGAACATGGAACAGTGGCTGTCGTCTATGGGGAAGCTAT  714

Query  473  AAACTGGAGATTGGGAAGAATA  494
            ||| ||||||||||||||||||
Sbjct  715  AAATTGGAGATTGGGAAGAATA  736



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559814943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5