BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951414
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65650.1 | Symbols: | Protein of unknown function (DUF1195)... 957 0.0
> AT5G65650.1 | Symbols: | Protein of unknown function (DUF1195)
| chr5:26239502-26241515 FORWARD LENGTH=964
Length=964
Score = 957 bits (518), Expect = 0.0
Identities = 576/604 (95%), Gaps = 3/604 (0%)
Strand=Plus/Plus
Query 1 CTCGCCGACACTCGAG-CTCTCTACAGATGAAGGATGGAGACTCCTTACCATTAAGCACT 59
|||||||||||||||| || | ||| ||||||||||||||| ||||||||| ||||||||
Sbjct 61 CTCGCCGACACTCGAGCCT-TTTACCGATGAAGGATGGAGATTCCTTACCAATAAGCACT 119
Query 60 TCTTCCGTCGCGGCCACGACGGTGAACGCCAAGAAGGAAACCGGTTATTCCGCTCTCTTC 119
|||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||
Sbjct 120 TCTTCCGTCGCGGCGACGACGGTGACCGGAAAGAAGGAAACCGGTTATTCCGCTCTCTTC 179
Query 120 TCCAAAGGCCGATACAAGTTTTGGGCCTTAGCTGCGATTTTGTTACTCGCATTCTGGTCA 179
|| |||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 180 TCGAAAGGCCGGTACAAGTTTTGGGCCTTAGCTGCGATTCTGTTACTCGCTTTCTGGTCA 239
Query 180 ATGCTCACTGGCACCGTCAATCTCCGTTGGTCTGCCGGTAGCATTAACCATTTCACCGAC 239
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 ATGCTCACTGGCACGGTCAATCTCCGTTGGTCTGCCGGTAACATTAACCATTTCACCGAC 299
Query 240 GATCTCGTCTTTCCGATCCACGAGGATCTCGATGTTCTTGAAATCGAGGAGAGGGAGAAA 299
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GATCTCGTCTTTCCCATCCACGAGGATCTCGATGTTCTTGAAATGGAGGAGAGGGAGAAA 359
Query 300 GTGGTGAAGCACATGTGGGATGTGTATAACAATGGCCGTCGTATAAGATTACCGAGGTTT 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 360 GTGGTGAAGCACATGTGGGATGTGTATAACAATGGCCGTCGTATCAGATTACCTAGGTTT 419
Query 360 TGGCAAGAGGCCTTCGAGGCTGCTTACGAGGAGCTTACCAGTGATGTACCTGATGTGGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGCAAGAGGCCTTCGAGGCTGCTTACGAGGAGCTTACCAGTGATGTACCTGATGTGGTT 479
Query 420 GAGGCTGCCATTTCCGAGATCGCTAGGATGTCTATTCGCTCCGTTGTTATAGATCCGCCT 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 GAGGCTGCCATTTCCGAGATCGCTAGGATGTCTATTCGCTCCATTGTTATAGATCCGCCT 539
Query 480 CCACTTCATTCTACGAATGTACGCGAATTGACAAAGACTCTAAAACTTGCGGACAAAGGA 539
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 CCGCTTCATTCCACGAATGTACGAGAATTGACAAAGACTCTAAAACTTGCGGACAAAGGA 599
Query 540 AGATCGACTCAAATATCAAAACCAAGCAGCCGTCGATTGAAATAGCTATAGAG-CTTTAC 598
||| | ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 600 AGAGCAACTCAAATATCAAAACCAAGCAGCCGTCGATTGAAATAGCTATGGAGGCTTTAC 659
Query 599 GAAA 602
||||
Sbjct 660 GAAA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29135805260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5