BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951415

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65660.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   669    0.0  


> AT5G65660.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr5:26245249-26246379 REVERSE LENGTH=740
Length=740

 Score =  669 bits (362),  Expect = 0.0
 Identities = 429/460 (93%), Gaps = 9/460 (2%)
 Strand=Plus/Plus

Query  1    CGCCACCGTCGTAGTAGAAGATGGAGAACACTCAAGATTTCTCGCCGCCCCACATGGATG  60
            |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct  115  CGCCACCGTCGTAGAAGAAGATGGAGAACACTCAAGATTTCTCGCCACCACACATGGATG  174

Query  61   CTTCTCGGCCGTCACTAGGATTCCCTCTTGGCACAGCTCTGCTTCTTATAATCATTTTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  175  CTTCTCGGCCGTCACTAGGATTCCCTCTTGGCACAGCTCTGCTTCTTATCATCATTTTCA  234

Query  121  GCCTCTCCGGAATATTCTCTTGTTGTTACCATTGGGACAAACATCGTTCTCTCCGCCGCT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  GCCTCTCCGGAATATTCTCTTGTTGTTACCATTGGGACAAACATCGTTCTCTCCGCCGCT  294

Query  181  CTTTGGCCAATGGTCGTCCCTCCTCCGCCTCCGCCGACATCGAGTCTAATCCTTACAAAC  240
            ||||||||||||||||       | | |||||||||||||||||||||||||||||||||
Sbjct  295  CTTTGGCCAATGGTCG-------T-C-CCTCCGCCGACATCGAGTCTAATCCTTACAAAC  345

Query  241  CTAAACCTCCTTTTCCGGACATGAAGAAACCTCAGAATCTGAGCGTGCCGGTATTAATGC  300
            | ||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||
Sbjct  346  CCAAACCCCCTTTTCCGGAAATGAAGAAACCGCAGAATCTGAGCGTACCGGTGTTAATGC  405

Query  301  CTGGAGATAATACACCCAAATTCATAGCATTGCCGTCTCCGTGTGCGCCACCTCGACCGG  360
            | |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct  406  CAGGAGATAATACACCCAAATTCATAGCATTGCCGTGTCCGTGTGCACCACCTCGACCTG  465

Query  361  AAAAACCCACCGTAGATGTCCAAACTCCGCCGCAATCGCCACCTGTCAAGCCACCGCGTT  420
            |||||| |||||||||||||||||||||||||||||| || ||||| |||||  ||||||
Sbjct  466  AAAAACTCACCGTAGATGTCCAAACTCCGCCGCAATCACCGCCTGTTAAGCCGGCGCGTT  525

Query  421  TTCCCGTTCCTTTGTATTAGATTTAGTTAGCTATAAGATA  460
            |||| |||||||||||||||||||| ||||||||||||||
Sbjct  526  TTCCTGTTCCTTTGTATTAGATTTAATTAGCTATAAGATA  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5