BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951424
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 551 7e-156
AT5G67590.1 | Symbols: FRO1 | NADH-ubiquinone oxidoreductase-re... 276 5e-73
> AT5G65570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26203968-26206184 FORWARD LENGTH=2217
Length=2217
Score = 551 bits (298), Expect = 7e-156
Identities = 470/547 (86%), Gaps = 36/547 (7%)
Strand=Plus/Plus
Query 25 TGATCGG-AGAA-AATGCGCCGGCGATGAGAAGAGATTATATCGGCGGATTGA------- 75
||||||| ||| ||||||||||| |||||||||||||||| |||||||||||
Sbjct 30 TGATCGGCGGAATAATGCGCCGGCAATGAGAAGAGATTATAACGGCGGATTGATCGCCTT 89
Query 76 -TCG-GATTTTTCAGCTTCTTTGCTACCAAAACCTGTTCGCCGGAATCTTCTATCCATAG 133
||| ||| ||||||||||||| ||| || ||| ||||| |||||||| |||||| |||
Sbjct 90 TTCGAGATATTTCAGCTTCTTTTCTAGCAGAACATGTTCACCGGAATCATCTATCAATAA 149
Query 134 TCAGTTAAGGTTTCTCAGCATCACTTGCG--A--CT--C--CGTACGCATAACTTTCCCT 185
||||| ||| ||||| |||||||||| | | || | || ||||| || |||| ||
Sbjct 150 CCAGTTTAGGCTTCTCTGCATCACTTGTGATACCCTGACAACG-ACGCACAA-TTTCTCT 207
Query 186 CCGCTTCTCAGACAATGCATGGACGAAAGATCGATATCAGCACTCAAGAAGATCCAAGCC 245
| |||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||
Sbjct 208 CAGCTTCTCAGACAATGCATCGACGAAAGATCGATATCAGGAATCAAGACTATCCAAGCC 267
Query 246 CAGATGCTGAAATCTGCTAATTCCGGCCGAACTTTCC-G--G---A--CG-C-ACGCGAG 295
|| ||||||||||||| | ||||||||||| ||||| | | | || | |||||||
Sbjct 268 CATATGCTGAAATCTGGT-TTTCCGGCCGAAATTTCCGGCAGCAAACTCGTCGACGCGAG 326
Query 296 TTTAAAGTGTGGCGAGATCGGTTACGCACGCCAGATGTTCGATGGAATGTCTGAGAGACA 355
||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 327 TTTAAAGTGTGGCGATATCGATTACGCACGACAGGTGTTCGATGGAATGTCTGAGAGACA 386
Query 356 TATCGTAACATGGAACTCTCTT-ATTGCTTATTTCATTGAGCACAGAAGAAGCAAGGAAG 414
||| ||||||||||||||| || ||||||||||| ||| |||||||||||||||||||||
Sbjct 387 TATTGTAACATGGAACTCT-TTAATTGCTTATTTAATTAAGCACAGAAGAAGCAAGGAAG 445
Query 415 CTGCTGAGATGTATAGATTGATGATCACGAATAATGTTTTGCCAGATGAGTACACGTTGT 474
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 446 CTGTTGAGATGTATAGATTGATGATTACGAATAATGTTTTGCCAGATGAGTACACGTTGT 505
Query 475 CCAGTGTTTTCAAGGCGTTTTCAGATTTGAGTCTCTTGAGAAGGAGGCACAGAGGAGCCA 534
| |||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||
Sbjct 506 CTAGTGTTTTCAAGGCGTTTTCAGATTTGAGTCT-T-GAGAAGGAAGCACAGAGAAGCCA 563
Query 535 CGGACTT 541
|||||||
Sbjct 564 CGGACTT 570
Score = 372 bits (201), Expect = 6e-102
Identities = 259/285 (91%), Gaps = 11/285 (4%)
Strand=Plus/Plus
Query 752 AGGGCTCATTGATTTATATGGGAAAACGTGGATGCTCAGACATGGCAAGGTTGGGTTTTT 811
|||||||||||||||||||||| ||| |||||||||||||||||||||| || || ||||
Sbjct 1221 AGGGCTCATTGATTTATATGGG-AAATGTGGATGCTCAGACATGGCAAGATT-GG-TTTT 1277
Query 812 TGACAACTTGAGTGAAGTTGCTGTTATATCTTTGAGCACAATGGTCTACAGTTATGCACA 871
||| | |||||||||||||| |||||||||||||| ||||||| | ||||||||||||||
Sbjct 1278 TGATACCTTGAGTGAAGTTGATGTTATATCTTTGAACACAATGATATACAGTTATGCACA 1337
Query 872 GAACGGTTTTGGACGCAAAGCACTTG-CGTTGTTTGAGATAATGATAAATCTTGGACTAC 930
|||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||| |
Sbjct 1338 GAACGGTTTTGGACGCGAAGCACTTGAC-TTGTTTGAGAGAATGATAAATCTTGGACTGC 1396
Query 931 AGCCTAACGATGTAACAGTCTTGAGCGTACTCTTGGCTTGTAATAACTCTGGA---G--- 984
|||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1397 AGCCGAACGATGTAACAGTCTTGAGCGTACTCTTGGCTTGTAATAACTCTAGATTAGTTG 1456
Query 985 AGGAAGGTTGCGAATTCTTTGACTCCTTCAGAAAGGATAAGATCA 1029
|||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1457 AGGAAGGTTGCGAACTCTTTGACTCCTTTAGAAAGGATAAGATCA 1501
Score = 278 bits (150), Expect = 1e-73
Identities = 193/214 (90%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 542 TTTAGTCGATGATTCCTTGCGAGTTCTCAAGGGT-TTCAGGTACCCAAATCAGGTAACTT 600
||| ||||||||||||||||| ||| ||||| || || | ||||||||||||||| | ||
Sbjct 948 TTTGGTCGATGATTCCTTGCGGGTTTTCAAGTGTATTGA-GTACCCAAATCAGGTGAGTT 1006
Query 601 GGACGTCCCTTCTATCAGGGCTTGCCCAAAACGGTAGAGAAGAGATGGCTCTAATCGAAT 660
||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1007 GGACGTCTCTTATATCAGGGCTTGTCCAAAATGGTAGAGAAGAGATGGCTCTAATCGAAT 1066
Query 661 TTAGAAAAATGATGCGCGGTTCAGTCAAACCCAACTCTTTTACATTGTCAAGTGCTCTCA 720
|||||||||||||||| | |||| |||| || ||||||||||||||||||||||||||||
Sbjct 1067 TTAGAAAAATGATGCGTGATTCAATCAAGCCTAACTCTTTTACATTGTCAAGTGCTCTCA 1126
Query 721 GGGGGTGTTCGAATCTCACAATGTTTGAACAAGG 754
||||||| ||||||||| ||||||||||| ||||
Sbjct 1127 GGGGGTGCTCGAATCTCGCAATGTTTGAAGAAGG 1160
> AT5G67590.1 | Symbols: FRO1 | NADH-ubiquinone oxidoreductase-related
| chr5:26958001-26959557 FORWARD LENGTH=738
Length=738
Score = 276 bits (149), Expect = 5e-73
Identities = 178/192 (93%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 1033 TTGAATTGGAATACAAGCGTGGCGAGATCGGCAATGTCTCCGGAATCCCTGAGGAGCATC 1092
|||| | ||| ||||||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct 161 TTGAGTCGGATTACAAGCGTGGTGAGATCGGTAAGGTCTCCGGAATCCCAGAGGAGCATC 220
Query 1093 TTTCCCGGAAGGTGATAATATACTCACCTGCTAGAACAGCTACCCAG-CAAGGATCTGGA 1151
|||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 221 TTTCTCGCAAGGTGATAATATACTCACCTGCTAGAACAGCTACCCAGTC-AGGATCTGGA 279
Query 1152 AAACTTGGAAAATGGAAGATAAACTTCGTCTCCACCTTAAAGTGGGAGAATCCGTTGATG 1211
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 280 AAACTCGGAAAATGGAAGATTAACTTCGTCTCCACCTTAAAGTGGGAGAATCCGTTGATG 339
Query 1212 GGGTGGACTTCT 1223
|| |||||||||
Sbjct 340 GGATGGACTTCT 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5