BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951425

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   525    1e-148


> AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr5:26200014-26203778 REVERSE LENGTH=3588
Length=3588

 Score =  525 bits (284),  Expect = 1e-148
 Identities = 424/485 (87%), Gaps = 36/485 (7%)
 Strand=Plus/Plus

Query  4    AAAACGCCACGGATCATCGATGGTCCGTCGAATACAACCACGGTGTAACTCCGGTTTGAC  63
            |||||||||||||||||||||| |||||||||||||||||||||| || || ||||||||
Sbjct  1    AAAACGCCACGGATCATCGATGATCCGTCGAATACAACCACGGTGCAATTCGGGTTTGAC  60

Query  64   TGGTTCAATCTCCGCCGTCGAATTCCTGAAGAAGAAATTTTCGACGGATGTTACGGTTCC  123
            ||||||| | |||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct  61   TGGTTCAGTATCCGCCTTCGAAGTCCTGAAGAAGAAATTCTCGACGGATGTTACGGTTCC  120

Query  124  TTCTCCGTTCACTCGCCGGCAGTTTTGCTCCGTGTCTCCGCTAATTCTCAATCTTCCGGA  183
            ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  121  TTCTCCGGTCACTCGCCGGCAGTTTTGCTCCGTGTCTCCGCTACTTCGCAATCTTCCGGA  180

Query  184  GGAAGAATCTGAT-C----------C-ACACCGTCTGCTCTCAATTCT--CT---C-TA-  224
            ||||||||||||| |          | |||||||||||| ||||||||  ||   | || 
Sbjct  181  GGAAGAATCTGATTCAATGAGTGTTCCACACCGTCTGCTATCAATTCTTTCTAAACCTAA  240

Query  225  T----AT----CTCCGTCCTTGAAATCTATGGTTCCTGCGATAAGCCCTTCCCACGTCTC  276
            |    ||    ||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct  241  TTGGCATAAATCTCCGTCCTTGAAATCTATGGTTTCTGCGATAAGCCCTTCTCACGTCTC  300

Query  277  CTCACTGTTCTCGCTCGATCTAGATCCCAAAACAGCTCCTAATTTTTTCTCACTGGATCT  336
             ||||| ||||| |||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct  301  TTCACTATTCTCACTCGATCTAGATCCGAAAACAGCTCTTAATTTTT-CTCACTGGATCT  359

Query  337  CACCGAATCCGAGATTCAATCACAGTGTA----C----GCATCCCTTCTTACTCTTCTCG  388
            ||| ||||||||||| ||| |||||||||    |    ||||||||||||||||||||| 
Sbjct  360  CACAGAATCCGAGATACAAGCACAGTGTATATTCCTATGCATCCCTTCTTACTCTTCTCA  419

Query  389  TCAACAATGGATATGTGGGTGTTGTGTTTAAGATCAGGTTATGGATGATTAAGAGCTGTG  448
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  420  TCAACAATGGATATGTGGGTGTTGTGTTTAAGATCAGGTTATTGATGATTAAGAGCTGTG  479

Query  449  ATTCA  453
            |||||
Sbjct  480  ATTCA  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21816203066


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5