BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951429
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65720.1 | Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 | nitrogen ... 2239 0.0
> AT5G65720.1 | Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 | nitrogen
fixation S (NIFS)-like 1 | chr5:26296253-26298072 FORWARD
LENGTH=1820
Length=1820
Score = 2239 bits (1212), Expect = 0.0
Identities = 1344/1408 (95%), Gaps = 7/1408 (0%)
Strand=Plus/Plus
Query 1 AAATCCGAGGTTTT-GAATCTATGGCGTCTAAGGTAATCTCTGCCACAATCCGCCGAACC 59
||| |||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 78 AAA-CCGAGGTTTTAGAAAC-ATGGCGTCTAAGGTAATCTCTGCCACAATCCGCAGAACC 135
Query 60 CTAACCAATCCACACGGCGCTTTTTCCCGGTGTCGTC-ACCTATCGACCGCCGCTGCTGC 118
|||||||| ||||||||| |||||||||||||||| | || |||| ||||||||||||||
Sbjct 136 CTAACCAAACCACACGGCACTTTTTCCCGGTGTCG-CTACTTATCAACCGCCGCTGCTGC 194
Query 119 GACGGCGGTGAATTACGAGGATGAATCGATTTTGATGAAAGGAGTTCGAATTTCAGGTAG 178
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 195 GACGGAGGTGAATTACGAGGATGAATCGATTATGATGAAAGGAGTTCGAATTTCAGGTAG 254
Query 179 ACCTCTTTATTTAGATATGCAAGCGACGACTCCGATTGATCCTAGGGTATTCGATGCGAT 238
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 255 ACCTCTTTACTTAGATATGCAAGCGACGACTCCGATTGATCCTAGAGTATTCGATGCGAT 314
Query 239 GAATGATTCCAC-GATCCATGAGTACGGTAATCCTCACTCGCGAACTCATATGTACGGCT 297
||||| || ||| |||||||||||| || ||||||||||||||||| ||| | |||||||
Sbjct 315 GAATGCTT-CACAGATCCATGAGTATGGGAATCCTCACTCGCGAACGCATCTCTACGGCT 373
Query 298 GGGAAGCTGAGAACGCCGTCGAGGTTGCTCGAATCCAGGTCGCGAAACTGATCGAAGCTT 357
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 374 GGGAAGCTGAGAACGCCGTCGAGAACGCACGAAACCAGGTCGCGAAACTGATCGAAGCTT 433
Query 358 CTCCGAAGGAGATCATATTCATGTCCGGTGCGACGGAGGCGAACAATACGGCGGTGAAAG 417
| |||||||||||| ||||| |||||||||| |||||||||||||||| |||||||||||
Sbjct 434 CACCGAAGGAGATCGTATTCGTGTCCGGTGCAACGGAGGCGAACAATATGGCGGTGAAAG 493
Query 418 GAGTGATGCACTTTTACAGGGACACGAAGAAACACGTTATCACTACACAGACTGAGCACA 477
|||||||||||||||||| ||||||||||||||| || || ||||||||||||||||| |
Sbjct 494 GAGTGATGCACTTTTACAAGGACACGAAGAAACATGTGATAACTACACAGACTGAGCATA 553
Query 478 AGTGTGTGCTTGATTCGTGTAGGCATTTGCAGCAAGAAGGATTTGAGGTAACTTACTTGC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 554 AGTGTGTGCTTGATTCGTGTAGGCATTTGCAGCAAGAAGGATTTGAGGTAACTTATTTAC 613
Query 538 CTGTGAAAACTGATGGATTGGTTGATTTAGAGATGTTGAAAGAAGCTATTAGACCAGATA 597
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 614 CTGTGAAAACTGATGGATTGGTTGATTTAGAGATGTTGAGAGAAGCTATTAGGCCAGACA 673
Query 598 CAGGGCTAGTTTCGATTATGGCTGTGAACAATGAGATTGGTGTGGTTCAGCCTATGGAGG 657
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 674 CAGGGCTAGTTTCTATTATGGCTGTGAACAATGAGATTGGTGTGGTTCAACCTATGGAGG 733
Query 658 AGATTGGTAGGATTTGCAAAGAGCATAATGTTCCGTTTCATACTGATGCTGCTCAAGCTA 717
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AGATTGGTATGATTTGCAAAGAGCATAATGTTCCGTTTCATACTGATGCTGCTCAAGCTA 793
Query 718 TTGGGAAGATACCTGTTGATGTTAAGAAGTGGAATGTTGCTTTGATGTCAATGAGTGCTC 777
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 794 TTGGGAAGATACCTGTTGATGTTAAGAAGTGGAATGTTGCTTTGATGTCTATGAGTGCTC 853
Query 778 ACAAGATCTATGGACCAAAAGGTGTTGGTGCTTTGTATGTGAGGAGGAGGCCGAGAATCA 837
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 ACAAGATCTATGGACCGAAAGGTGTTGGTGCTTTGTATGTGAGGAGGAGGCCGAGAATCA 913
Query 838 GGCTTGAGCCGTTGATGAATGGTGGAGGTCAGGAGAGGGGGTTGCGTAGTGGCACGGGGG 897
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 914 GGCTTGAGCCGTTGATGAATGGTGGAGGTCAGGAGAGGGGATTGCGTAGTGGTACGGGGG 973
Query 898 CTACGCAGCAGATTGTTGGGTTTGGGGCTGCTTGTGAATTGGCGATGAAGGAGATGGAGT 957
|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 974 CTACGCAGCAGATTGTTGGGTTCGGGGCTGCTTGTGAGTTGGCTATGAAGGAGATGGAGT 1033
Query 958 ATGATGAGAAGTGGATTAAGGGACTGCAGGAGAGGTTGCTGAATGGGATTAGAGAGAAGC 1017
|||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 1034 ATGATGAGAAGTGGATTAAGGGGTTACAGGAGAGGTTGCTGAATGGGGTTAGAGAGAAGC 1093
Query 1018 TTGATGGTGTTGTGGTGAATGGTTCAATGGATAGTCGATATGTAGGGAATCTGAATTTGT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1094 TTGATGGTGTTGTGGTGAATGGTTCAATGGATAGTCGATATGTAGGGAATTTGAATTTGT 1153
Query 1078 CGTTTGCTTATGTTGAAGGAGAGAGTCTGTTGATGGGGTTGAAGGAAGTTGCAGTGTCTA 1137
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1154 CGTTTGCTTATGTTGAAGGAGAGAGTTTGTTGATGGGATTGAAGGAAGTTGCAGTGTCTA 1213
Query 1138 GTGGAAGTGCTTGTACTAGTGCGAGTTTGGAGCCTTCTTATGTGTTGAGAGCTTTGGGTG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 GTGGAAGTGCTTGTACTAGTGCGAGTTTGGAGCCTTCTTATGTGTTGAGAGCTTTGGGTG 1273
Query 1198 TGGATGAGGACATGGCTCACACTTCGATTAGGTTTGGGATTGGTAGGTTTACCACAAAGG 1257
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1274 TGGATGAAGACATGGCTCACACTTCGATTAGGTTTGGGATTGGTAGGTTTACCACGAAGG 1333
Query 1258 AAGAGATCGATAAAGCGGTCGAGCTTACGGTTAAACAAGTTGAGAAGTTGAGGGAAATGA 1317
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 AAGAGATTGATAAAGCGGTCGAGCTTACGGTTAAACAAGTTGAGAAGTTGAGGGAAATGA 1393
Query 1318 GCCCGCTTTATGAAATGGTTAAAGAAGGTATCGATATCAAGAACATACAATGGTCTCAAC 1377
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1394 GCCCGCTTTATGAAATGGTTAAAGAAGGTATCGATATCAAGAACATTCAATGGTCTCAAC 1453
Query 1378 ACTGATTCAACAGTTCCACTCAAACTGT 1405
||||||||||||||||||||||||||||
Sbjct 1454 ACTGATTCAACAGTTCCACTCAAACTGT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69276752100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5