BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951435
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49680.1 | Symbols: ATBCAT-3, BCAT3 | branched-chain aminotr... 904 0.0
> AT3G49680.1 | Symbols: ATBCAT-3, BCAT3 | branched-chain aminotransferase
3 | chr3:18422649-18425693 FORWARD LENGTH=1581
Length=1581
Score = 904 bits (489), Expect = 0.0
Identities = 861/1040 (83%), Gaps = 27/1040 (3%)
Strand=Plus/Plus
Query 249 ACTGAATTAGCCGAAATTGATTGGGACA-AGATT-GATTTTGGGCTAAAACCAACGGATT 306
|||||||||||||| || |||||||| | | || || |||||||| || ||| | ||||
Sbjct 339 ACTGAATTAGCCGACATAGATTGGGATACCG-TTGGA-TTTGGGCTTAAGCCAGCTGATT 396
Query 307 ACATGTACGCCATGAAATGTAGCCGTGATGGTGAATTCTCTCAAGGTCAATTGCTTCCTT 366
| ||||| | |||||||||| | |||||| || ||||| ||||| | |||| | ||
Sbjct 397 ATATGTATGTGATGAAATGTAACATTGATGGAGAGTTCTCAAAAGGTGAGTTGCAACGTT 456
Query 367 TTGGTAACATTGAAATCAACCCATCAGCTGCTGTACTCAACTATGGTCAAGGTTTGTTTG 426
|||| || |||||||| | |||||| |||| ||||||||||||||| || || |||||||
Sbjct 457 TTGGGAATATTGAAATTAGCCCATCTGCTGGTGTACTCAACTATGGACAGGGATTGTTTG 516
Query 427 AAGGACTAAAAGCTTACAGAAA-ACAAGACGG---TAACATTCTCCTCTTCCGTCCTGAG 482
|||| ||||||||||||||||| | |||| || |||||| |||||||| |||||||||
Sbjct 517 AAGGGCTAAAAGCTTACAGAAAGA-AAGATGGTAATAACATCCTCCTCTTTCGTCCTGAG 575
Query 483 GAGAATGCGATCCGAATGATAAATGGCGCTGAAAGAATGTGCATGCCTTCTCCAACCGTC 542
|||||||| | || |||| |||||| ||||| || ||||| |||||| ||||||||||
Sbjct 576 GAGAATGCAAAGCGTATGAGAAATGGTGCTGAGAGGATGTGTATGCCTGCTCCAACCGTT 635
Query 543 CAACAGTTTGTTGAGGCTGTGA-A-AACTACTGTATTAGCAAACCAACGCTGGATTCCAC 600
| |||||||| || ||||||| | || |||||| |||||||| |||| ||| ||||||
Sbjct 636 GAGCAGTTTGTAGAAGCTGTGACAGAA--ACTGTACTAGCAAACAAACGTTGGGTTCCAC 693
Query 601 CTCCAGGTAAAGGTTCATTATACATAAGGCCATTGCTTATGGGAACTGGAGCTGTTCTTG 660
| |||||||||||||| ||||| | || |||||||| |||||||| |||||||||||||
Sbjct 694 CACCAGGTAAAGGTTCCTTATATGTTAGACCATTGCTAATGGGAACAGGAGCTGTTCTTG 753
Query 661 GTCTTGCTCCTGCTCCTGAATACACTTTCCTCATCTTTGTTTCACCCGTCGGGAACTACT 720
||||||| ||||| || ||||| |||||| | |||| |||||| || || ||||||||||
Sbjct 754 GTCTTGCGCCTGCACCAGAATATACTTTCATTATCTATGTTTCGCCTGTTGGGAACTACT 813
Query 721 TCAAGGAAGGTGTTGCGCCGATCAACTTAATTGTTGAAAATGAATTCCATCGTGCAACTC 780
||||||||||||| || || ||||| || ||||| || |||||||| || ||||||||||
Sbjct 814 TCAAGGAAGGTGTGGCACCTATCAATTTGATTGTGGAGAATGAATTTCACCGTGCAACTC 873
Query 781 CTGGCGGTACTGGAGGTGTTAAAACCATCGGTAATTATGCTGCAGT-CTTGAAAGCACAG 839
|||| ||||| ||||||||||||||||| || |||||||||||||| | |||| ||||||
Sbjct 874 CTGGTGGTACCGGAGGTGTTAAAACCATAGGCAATTATGCTGCAGTAC-TGAAGGCACAG 932
Query 840 TTGATTGCGAAAGCTAAAGGGTATTCTGATGTTTTATACCTTGATTGCGTTCATAAAAGA 899
| ||||||||||||||||| ||||| |||||||| |||||||||||| || | ||||||
Sbjct 933 TCAATTGCGAAAGCTAAAGGATATTCCGATGTTTTGTACCTTGATTGCATTTACAAAAGA 992
Query 900 TATCTCGAGGAGGTTTCATCGTGTAATATTTTCATTGTGAAGGATAATATCATATCTACT 959
||||| |||||||| || || || ||||||||||| |||||||| ||| | |||||||||
Sbjct 993 TATCTTGAGGAGGTCTCGTCTTGCAATATTTTCATCGTGAAGGACAATGTGATATCTACT 1052
Query 960 CCTGAAATTAAAGGAACCATCTTGCCTGGAATAACCCGGAAGAGTATAATCGAAGTGGCT 1019
|||||||| ||||||||||| || || || || || || || ||||| || || ||||||
Sbjct 1053 CCTGAAATAAAAGGAACCATTTTACCCGGTATTACTCGAAAAAGTATGATAGACGTGGCT 1112
Query 1020 CGTAGC-CAA-GGTTTCAAGGTGGAGGAACGAAATGTGACCGTTGATGAATTGGTAGAAG 1077
|| | | ||| |||||| ||||||||||||| |||||||| || ||||||||| ||||||
Sbjct 1113 CG-AACACAAGGGTTTC-AGGTGGAGGAACGGAATGTGACAGTGGATGAATTGTTAGAAG 1170
Query 1078 CGGACGAGGTTTTCTGCACAGGAACCGCCGTTGTTTTATCTCCGGTTGGAAGCATTACTT 1137
| ||||||||||||||||||||||||||||| ||| | ||||| ||||||||| | ||||
Sbjct 1171 CAGACGAGGTTTTCTGCACAGGAACCGCCGTGGTTGTCTCTCCTGTTGGAAGCGTCACTT 1230
Query 1138 ACAAAAGCCAAAG-GTTTTCCTATGGAGAAGATGGCTTTGGAACAGTCTCGAAACAACTC 1196
||||| || |||| || | | || ||||||| | ||| ||||| || ||||| ||||||
Sbjct 1231 ACAAAGGCAAAAGAGTGT-CTTACGGAGAAGGTACCTTCGGAACTGTGTCGAAGCAACTC 1289
Query 1197 TACAC--TTCCTTAACGAGCCTGCAAATGGGTCTGAGCGAAGATAACATGAACTGGACTG 1254
||||| ||| | | | ||| |||| |||||||||| ||||| |||||||| |||||||
Sbjct 1290 TACACCGTTC-TGA-CAAGCTTGCAGATGGGTCTGATTGAAGACAACATGAAATGGACTG 1347
Query 1255 TTCAAT-TGAGTTAAACCAG 1273
| ||| | |||||| ||||
Sbjct 1348 TG-AATCTTAGTTAAGCCAG 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63353087790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5