BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951445
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65890.1 | Symbols: ACR1 | ACT domain repeat 1 | chr5:263549... 2375 0.0
> AT5G65890.1 | Symbols: ACR1 | ACT domain repeat 1 | chr5:26354909-26357866
FORWARD LENGTH=1783
Length=1783
Score = 2375 bits (1286), Expect = 0.0
Identities = 1402/1460 (96%), Gaps = 0/1460 (0%)
Strand=Plus/Plus
Query 16 TTAAGATGATGGAAATAGCTTATCAGCCTCGGATTGATTCCGAGATCGAATCACTCGTCG 75
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 200 TTAAGATGATGGAAATAGCTTATCAGCCTCGGATTGATTCCGAGATTGAATCACTCGTCG 259
Query 76 AGAGAATCAATCCTCCCAGGGTTTGTGTAGACAACGACTCAGACCCAGAGTGCACACTTA 135
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 260 AGAGAATCAATCCTCCAAGGGTTTGTGTAGACAACGACTCTGACCCAGAGTGCACACTTA 319
Query 136 TTAAGGTAGATAGCGCGAACAAGTACGGGATATTACTGGATATGGTTCAAGTGTTCGCCG 195
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 320 TTAAGGTAGATAGCGCGAACAAGTACGGGATATTACTGGACATGGTTCAAGTGTTAGCCG 379
Query 196 ATCTTGATCTCGTTATCTCCAAATGTTACATCTCATCTGATGGTGAATGGTTCATGGATG 255
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 380 ATCTTGATCTCGTTATCTCCAAATGTTACATCTCATCTGATGGCGAATGGTTCATGGATG 439
Query 256 TGTTTCACGTGACAGACCAACTCGGAAACAAGCTCACAGACCGAAGCCTTATTCTCTACA 315
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 440 TGTTTCACGTGACAGACCAACTCGGGAATAAGCTCACCGACCGAAGCCTTATTCTCTACA 499
Query 316 TTCAACAGGCAATATGTTCTAGTAGAACGGGAGGTATAACAAAGGAGATGCAGAGTAATC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TTCAACAGGCAATATGTTCTAGTAGAACGGGAGGTATAACAAAGGAGATGCAGAGTAATC 559
Query 376 TAAAACGGGAGGTGCAACAGCGCCACGTTTCAACAGAGCACACGGCCTTTGAGATAACCG 435
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 560 TAAAACGGGAGGTGCAACAGCGCCACGTGTCAACAGAACACACGGCCTTTGAGATAACCG 619
Query 436 GAATCAACAGACCGGGTCTACTGTCCGAAATATCTGCCGTACTTTCCGACATTGGATGTC 495
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 620 GAATCAATAGACCGGGTCTACTATCCGAAATATCTGCCGTACTTTCCGACATTGGATGTC 679
Query 496 ACGTGACGGCTGCAGTGGCATGGACCCACCACGAGCGAGCGGCGATGGTGATTTATCTAG 555
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 680 ACGTGACGGCTGCTGTTGCATGGACCCACCACGAGCGAGCGGCTATGGTGATTTATCTAG 739
Query 556 AAGACGGGTTCAACGGTGGGCCTATAATCGACCCAATAAGAAAGGCCCAAGTAAAGGATC 615
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 740 AAGACGGGTTTAACGGTGGGCCCATTATCGACCCAATAAGAAAGGCCCAAGTAAAGGATC 799
Query 616 ATCTTGATACAGTCATGGAGGCCCATCACAGAGTTGGCGATGTGTCTCATGTTGTCGTGA 675
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 800 ATCTGGATACAGTCATGGAGGCCCATCACATAGTTGGCGATGTGTCTCATGTCGTCGTGA 859
Query 676 GGGTTGTCGAGGCTAAAGGAGCTCCCGTCGGGTGGGCTCACACTGAGCGACGACTTCACG 735
|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 860 GGGTCGTCGAGGCTAAAGGAGTTCCGGTCGGGTGGGCTCACACTGAGCGACGACTTCACG 919
Query 736 AGCTAATGTACGGAGAAGGAGATTACGAGAATTGCTTCGACTGCGATTGTTTCGGAGACA 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AGCTAATGTACGGAGAAGGAGATTACGAGAATTGCTTCGACTGCGATTGTTTCGGAGACA 979
Query 796 GGTGCGATGCTTTGTGGAGAGGAAGATGCGAGAGGATACACGTGACGATCGAAGCATGTA 855
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 980 GGTGCGATGCTTTGTGGAGAGGAAGATGCGAGAGGATACACGTGACAATCGAAGCATGTA 1039
Query 856 ATGGCTATTCAATGGTGAATGTTAAGTGTAGAGACAGACCAAAACTACTTTTCGACACGG 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 ATGGCTATTCAATGGTGAATGTTAAGTGTAGAGACAGACCAAAACTACTTTTCGACACGG 1099
Query 916 TGTGTGCATTGAAAGAGTTACAATTCGTAGTGTTTCACGCCGTCGCCGGAGCTAAAGGAT 975
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1100 TGTGTGCTTTGAAAGAGTTACAATTCGTTGTGTTTCACGCCGTCGCCGGAGCTAAAGGCT 1159
Query 976 CGACGGCGGAGCAAGAATATTTCATAAGAAAGAAGAACGGGTGCACGTTAGAAACGGAAG 1035
| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1160 CCACTGCAGAGCAAGAATATTTCATAAGAAAGAAGAACGGGGGCACGTTAGAAACGGAAG 1219
Query 1036 TGCAAAGAGAAAGACTAAGGCATTGTTTGGTTGCTGCGATTTCGAGACGTGCTTCACGAG 1095
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1220 GGCAAAGAGAGAGACTAAGGCATTGTTTGGTTGCTGCGATTTCGAGACGTGCTTCACAAG 1279
Query 1096 GTTTGAAACTCGAGATTCGGACTGAGAATAAGATGGGTTTGTTGTCGGATGTGACTAGAG 1155
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1280 GATTGAAACTCGAGATTCGGACAGAGAACAAGATGGGTTTGTTGTCGGATGTGACTAGAG 1339
Query 1156 TCGTGAGAGAAAACGGTTTATCGATAACGAGAGCTGAGATGTGCACGCAAGGTGAGATTG 1215
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 TTGTGAGAGAAAACGGTTTATCGATAACGAGAGCTGAGATGTGCACGCAAGGTGAGATTG 1399
Query 1216 CGGTTGGCTCGTTTTATGTCACGGATGTGAATGGTGGTGAGACGGATCCGAGTGCGGTTG 1275
||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||
Sbjct 1400 CGGTTGGCTCGTTTTATGTTACGGATGTGAATGGTGGTGAGACGGGTCCTAGTGAGGTTG 1459
Query 1276 AAGCGGTTGAACGAGAATTAGGTGGAGCGGTTGTGTCAGCGGTTAAAGCGGTTGGGATGA 1335
||||||||| ||||||||| || ||||||||||||||||||||||||| |||||| ||||
Sbjct 1460 AAGCGGTTGTACGAGAATTGGGAGGAGCGGTTGTGTCAGCGGTTAAAGGGGTTGGAATGA 1519
Query 1336 TGCCGAAGAGGATGGGTTCAACGAGTGATAGTGTGGAGCAAGACAAAGCTAAGTCGTCGA 1395
|||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 1520 TGCCGAGGAGGATTGGTTCGACGAGTGATAGTGTGGAGCAGGACAAAGCTAAGTCGTCTA 1579
Query 1396 TTGGGAGATTGTTTTGGTCTAAATTAGAGAGATTGTCAACGTCTATAAGATCGTTGTGAA 1455
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1580 TTGGGAGAATGTTTTGGTCTAAATTAGAGAGGTTGTCAACGTCTATAAGATCGTTGTGAA 1639
Query 1456 GTGTTTGATTAGAGGATTTT 1475
|||||||||||| || ||||
Sbjct 1640 GTGTTTGATTAGTGGTTTTT 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5