BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951452

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67620.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   870    0.0  


> AT5G67620.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: microtubule; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G62900.1); Has 
1807 Blast hits to 1807 proteins in 277 species: Archae - 0; 
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses 
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26964770-26965996 
REVERSE LENGTH=946
Length=946

 Score =  870 bits (471),  Expect = 0.0
 Identities = 551/586 (94%), Gaps = 19/586 (3%)
 Strand=Plus/Plus

Query  1    TTTTTTGC-aaaaaaataaaaaTGGGGAATTGTCAAGCGGCGGAAGCAGCGACGGTTTTG  59
            |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  256  TTTTTTGCAAAAAAAATAAAAATGGGGAATTGTCAAGCGGCCGAAGCAGCGACGGTTTTG  315

Query  60   ATTCATCACCCGGCGGAGAACAAGGTGGAGAGGATTTACTGGTCAGTGACAGCGAGTGAT  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  316  ATTCATCACCCGGCGGAGAACAAGGTGGAGAGGATTTACTGGTCAGTGACAGCGAGTGAC  375

Query  120  GTCATGAAATCCAATCCTGGTCATTACGTTGCGGTGGTGGTGACGTCACCTACGATGAAG  179
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  376  ATCATGAAATCCAATCCTGGTCATTACGTTGCGGTGGTGGTGACGTCACCTACGATGAAG  435

Query  180  AACGAGAAAGGATCGCCATTGAAGCAGCTTAAACTCCTTCGTCCTGACGACACTTTACTC  239
            ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  436  AACGAGAAAGGTTTGCCACTGAAGCAGCTTAAACTCCTTCGTCCTGACGACACTTTACTC  495

Query  240  ATCGGACATGTCTATCGTCTCGTCAGCTTCGAAGAGGTTTTGAACGAGTTTGCGACGAAG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  496  ATCGGACATGTCTATCGTCTCGTCAGCTTCGAAGAGGTTTTGAACGAGTTTGCGACGAAG  555

Query  300  AAGTGTGTGAAGCTTGGGAAGTTATTgaaagaaggaggagggcttgacttgacgaagaag  359
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  556  AAATGTGTGAAGCTTGGCAAGTTATTGAAAGAAGGAGGAGGGCTTGACTTGACGAAGAAG  615

Query  360  aagacgaagaaacacaggaagaagaagCTGGATCATCAGGAAACGGGCCGAGTCAACCCG  419
            |||||||| |  |||||||||||||||||||||||   ||||||||||  ||||||||||
Sbjct  616  AAGACGAA-A--CACAGGAAGAAGAAGCTGGATCA---GGAAACGGGCAAAGTCAACCCG  669

Query  420  -----G-ATCCGAA-CC-AA----GATGGAGCTAATGATGCGGTCGCCGGAGAAAACGGG  467
                 | ||||||| || ||    ||||| ||| || |||||||||||||||||||||||
Sbjct  670  AATTCGGATCCGAATCCGAACCAAGATGGCGCTGATAATGCGGTCGCCGGAGAAAACGGG  729

Query  468  GGAGATGGGTTTATGAGGAGGAGCCACGGTGGAGGAAGAGGTGGCGGTGGGTGGAGGCCA  527
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  730  GGAGATGGGTTTATGAGGAGGAGCCACGGTGGAGGAAGAGGTGGTGGTGGGTGGAGGCCA  789

Query  528  GCTTTACACAGCATTCCCGAATTTGGATCCTCATGAGAGATCTTGA  573
            ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  790  GCTTTACACAGCATTCCGGAATTTGGATCCTCATGAGAGCTCTTGA  835



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28030654026


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5