BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951466
Length=370
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67488.1 | Symbols: | other RNA | chr5:26933950-26934867 FO... 453 5e-127
AT5G67490.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 453 5e-127
> AT5G67488.1 | Symbols: | other RNA | chr5:26933950-26934867
FORWARD LENGTH=643
Length=643
Score = 453 bits (245), Expect = 5e-127
Identities = 321/356 (90%), Gaps = 12/356 (3%)
Strand=Plus/Minus
Query 15 ATCTAACAATGGCGACGAACAACATCGTCCGTTTGATCGCACCAAGCGGATCCGCCTCCT 74
|||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||
Sbjct 478 ATCTAACAATGGCGACGAACAACATCGTACGTTTGATCGCTCCAAGCCGATCCGTCTCCT 419
Query 75 CTAGATTGCTCCAGCCAGTGTCACGGTTTTTAAGCTCCGGTACTCCTCCTCCGCCGCAGG 134
||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 418 CTAGATTCCTCGAGCCAGTGTCACGGTTTCTAAGCTCCGGTACACCTCCTCCGCCGCAAG 359
Query 135 CTCCATCCCCGTCTCCGAATCTGGATCTGAACCGGAACGTGAAGCCAGATCAGAATCTTC 194
||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 358 CTCCA------TCTCCGAATCAGGATCTGAACCGGGACGTGAAGCCAGATCAGAATCTTC 305
Query 195 AACAGAATCTGC--a-g-a-aa-gaagaagaaggggaagaagaaggagaagGAGGTGGAG 248
|||||||||||| | | | || |||||||||| ||||| |||||| | ||||||||||
Sbjct 304 AACAGAATCTGCAGATGCAGAAGGAAGAAGAAGAGGAAGGAGAAGGTGGTGGAGGTGGAG 245
Query 249 AGTTTGTGAACGAAGATACTGGTGAGATCGGAGGACCTAGAGGTCCTGAGCCGACTCGGT 308
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 244 AGTTTGTGAACGAAGATACTGGTGAGATTGGAGGGCCTAGAGGTCCTGAACCGACTCGGT 185
Query 309 ACGGCGATTGGGAACAACGTGGTCGATGCTCCGATTTCTAAGACGATTCATGAATC 364
||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||
Sbjct 184 ACGGCGATTGGGAACAACGTGGTCGATGCTCTGATTTCTGAGAGGATTCATGTATC 129
> AT5G67490.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:26934153-26934952 REVERSE LENGTH=800
Length=800
Score = 453 bits (245), Expect = 5e-127
Identities = 321/356 (90%), Gaps = 12/356 (3%)
Strand=Plus/Plus
Query 15 ATCTAACAATGGCGACGAACAACATCGTCCGTTTGATCGCACCAAGCGGATCCGCCTCCT 74
|||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||
Sbjct 251 ATCTAACAATGGCGACGAACAACATCGTACGTTTGATCGCTCCAAGCCGATCCGTCTCCT 310
Query 75 CTAGATTGCTCCAGCCAGTGTCACGGTTTTTAAGCTCCGGTACTCCTCCTCCGCCGCAGG 134
||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 311 CTAGATTCCTCGAGCCAGTGTCACGGTTTCTAAGCTCCGGTACACCTCCTCCGCCGCAAG 370
Query 135 CTCCATCCCCGTCTCCGAATCTGGATCTGAACCGGAACGTGAAGCCAGATCAGAATCTTC 194
||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 371 CTCCA------TCTCCGAATCAGGATCTGAACCGGGACGTGAAGCCAGATCAGAATCTTC 424
Query 195 AACAGAATCTGC--a-g-a-aa-gaagaagaaggggaagaagaaggagaagGAGGTGGAG 248
|||||||||||| | | | || |||||||||| ||||| |||||| | ||||||||||
Sbjct 425 AACAGAATCTGCAGATGCAGAAGGAAGAAGAAGAGGAAGGAGAAGGTGGTGGAGGTGGAG 484
Query 249 AGTTTGTGAACGAAGATACTGGTGAGATCGGAGGACCTAGAGGTCCTGAGCCGACTCGGT 308
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 485 AGTTTGTGAACGAAGATACTGGTGAGATTGGAGGGCCTAGAGGTCCTGAACCGACTCGGT 544
Query 309 ACGGCGATTGGGAACAACGTGGTCGATGCTCCGATTTCTAAGACGATTCATGAATC 364
||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||
Sbjct 545 ACGGCGATTGGGAACAACGTGGTCGATGCTCTGATTTCTGAGAGGATTCATGTATC 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17392641154
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5