BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951469
Length=2729
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67470.1 | Symbols: ATFH6, FH6 | formin homolog 6 | chr5:269... 4335 0.0
> AT5G67470.1 | Symbols: ATFH6, FH6 | formin homolog 6 | chr5:26926713-26930470
FORWARD LENGTH=3080
Length=3080
Score = 4335 bits (2347), Expect = 0.0
Identities = 2620/2749 (95%), Gaps = 30/2749 (1%)
Strand=Plus/Plus
Query 3 AGTTAATCACGATTCGCCATGAGAGCTCTTGAATCCAGA------ttcttcttcttc-t- 54
|||| ||||||||||||||||| ||||||| |||||||| |||||||||||| |
Sbjct 105 AGTTTATCACGATTCGCCATGAAAGCTCTTCAATCCAGATTCTTCTTCTTCTTCTTCTTC 164
Query 55 t-catcttcttctCAGTTTCCGTTAGTAGTGAA-CTTCATCGGAGAATCCTTCATCAGCC 112
| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 165 TACATCTTCTTCTCAGTTTCCGTTAGTAGTGAAGC-TCATCGGAGAATCCTTCATCAGCC 223
Query 113 GCTTTTCCCGGAAACTTCTACTCCTCCACCACCAGATTTCGAATCAACGCCGTCTCCCCC 172
||||||||||||| |||||||||| ||||||||||||||| |||| || |||||||| ||
Sbjct 224 GCTTTTCCCGGAATCTTCTACTCCACCACCACCAGATTTCCAATCGACACCGTCTCCTCC 283
Query 173 TATACCAAACACTCCCGATCAGCCATTTTTCCCGGAGAATCCTTCTACGCCTCAACAAAC 232
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TCTACCCGACACTCCCGATCAGCCATTTTTCCCGGAGAATCCTTCTACGCCTCAACAAAC 343
Query 233 TC-AGTATCCTCCTCCGCCACCTCCTGTTTCCGCCGACGTCAATGGCGGATTACCGATTC 291
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 TCTA-TTTCCTCCTCCGCCACCTCCTGTTTCCGCCGACGTCAATGGCGGATTACCGATTC 402
Query 292 CAACAGCTACCACTCAATCAGCGAAGCCTGGGAAAAAAGTTGCAATCGTCATTTCTGTTG 351
|||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 403 CAACTGCTACTACTCAATCAGCCAAGCCTGGGAAAAAAGTTGCTATCGTCATTTCTGTTG 462
Query 352 GAATTGTCACGCTTGGGATGCTTTCTGCTTTAGCTTTCTTCTTGTATCGTCATAAAGCCA 411
||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 463 GAATTGTCACGCTCGGGATGCTTTCTGCTCTAGCTTTCTTCTTGTACCGTCATAAAGCCA 522
Query 412 AGCACGCGAGCGATACTCAGAAGCTTGTTAGTGGAGGTGGCGATGGCGGCGGTTCTCGAA 471
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 523 AGCACGCCAGCGATACTCAGAAGCTTGTTACTGGAGGTGGCGATGGCGGCGGTTCTCGAA 582
Query 472 GATTCCAGGAAGATCCAGGACCACCGACGACGACGTCGTCTACATTTCTCTACATGGGAA 531
|||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 583 GATTCCAGGAAGATTCAGGACCACCGACGACGACGTCTTCTACATTTCTCTATATGGGAA 642
Query 532 CTGTTGAACCGAGCCGTGTATCGGCCAGTGAGTCTAACGGCGGAACTAATGGACCGGTTA 591
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 643 CTGTTGAACCGACCCGTGTTTCGGCGAGTGAGTCTAACGGCGGAACTAATGGACCCGTTA 702
Query 592 ATTCGTCTCCGTACCGGAAATTGAATTCCGCTAAGAGATCGGAACGGTATAGGCCGAGTC 651
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 703 ATTCGTCTCCGTACCGGAAATTGAATTCGGCTAAGAGATCGGAACGGTATAGGCCCAGTC 762
Query 652 CGGAGCTTCAACCGCTTCCTCCGTTAGCTAAACCGCCGCAACCGTCTGATAACTCTCCGT 711
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 763 CGGAGCTCCAACCGCTTCCTCCGTTAGCTAAACCCCCGCAACCCTCTGATAACTCTCCGT 822
Query 712 CGGCTTTATCTCCTTCTTCATCATCTTCCGGTGAAGAATGCCGTGACACGGCGTTTTACA 771
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 823 CGGCTTTATCTCCTTCTTCATCATCTTCCGGTGAAGAATGCCGTGACACAGCGTTTTACA 882
Query 772 CGCCGCATGGATCTGCGATCAGCAGCGATGACGGTTACTACACGGCATTTCCTCGCTCCG 831
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 883 CGCCGCACGGATCTGCGATCAGCAGCGATGACGGTTACTACACCGCATTCCCTCGCTCCG 942
Query 832 CCAA---ATCACTTCCTCACTCGAAGAGAACATCTCCGAGGTCTAAGTTTGGATCAGCTC 888
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CCAATGGATCACTTCCTCACTCGAAGAGAACATCTCCGAGGTCTAAGTTTGGATCAGCTC 1002
Query 889 CTG-CGACGGCAGCATCTAGGTCGCCGGAGATGAAACACGTCATCATCCCGTCAATAAAG 947
| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1003 C-GACGACGGCAGCATCTAGGTCGCCGGAGATGAAACACGTCATCATCCCGTCGATTAAG 1061
Query 948 CAGAAACTGCCGCCACCAGTACAACCTCCGCCTCTAAGGGGCTTGGAAAGTGATGAACAA 1007
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1062 CAGAAACTGCCGCCACCGGTACAACCTCCGCCTCTAAGAGGCTTGGAAAGTGATGAACAA 1121
Query 1008 GAGCTTCCTTATTCCCAGAACAAGCCTAAGTTCTCGCAGCCACCTCCACCGCCGAACAGG 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1122 GAGCTTCCTTATTCCCAGAACAAGCCTAAGTTCTCGCAGCCACCTCCACCGCCCAATAGG 1181
Query 1068 GCGGCGTTTCAAGCAATAACTCAGGATAGATCACCAGTGCCTCAACCACGGCGGTctcca 1127
|||||||||||||| ||||||||||| | |||||||||||| | |||||| |||||||||
Sbjct 1182 GCGGCGTTTCAAGCCATAACTCAGGAAAAATCACCAGTGCCACCACCACGACGGTCTCCA 1241
Query 1128 cctccagtccagactccaccaccaccacctcctcctccgcctcttgctccgcctccacct 1187
|||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1242 CCTCCACTCCAGACTCCACCACCACCTCCTCCTCCGCCGCCTCTTGCTCCGCCTCCACCT 1301
Query 1188 cctcAGAAACGGCCGAGAGATTCCCA-ACTGCTACGAAAAGTCACCAATTCGGAAGCAAC 1246
|||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 1302 CCTCAGAAACGGCCGAGAGATTTCCAGA-TGCTACGAAAAGTCACCAATTCGGAAGCAAC 1360
Query 1247 AACCAATTCCACAACGTCACCTTCAAGAAAACAAGCATTCAAGACTCCAAGTCCTAAATC 1306
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1361 AACCAATTCTACAACGTCACCTTCAAGAAAACAAGCATTCAAGACTCCAAGTCCTAAAAC 1420
Query 1307 GAAGGCTGTCGAAGAGGTCAATAGCGTATCAGCAGGTTCTCTTAAGGAAA-CAGATGATG 1365
||||||||| ||||||||||||||||||||||||||||||||| | |||| ||| |||||
Sbjct 1421 GAAGGCTGTTGAAGAGGTCAATAGCGTATCAGCAGGTTCTCTTGA-GAAATCAGGTGATG 1479
Query 1366 GGGACACGGACCCAAGCAAGCCAAAGTTAAAGCCACTCCACTGGGACAAAGTACGAGCGA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GGGACACGGACCCAAGCAAGCCAAAGTTAAAGCCACTCCACTGGGACAAAGTACGAGCGA 1539
Query 1426 GCTCAGATCGAGCCACTGTTTGGGACCAACTCAAATCAAGCTCATTCCAATTGAACGAGG 1485
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1540 GCTCAGATCGAGCCACTGTTTGGGACCAGCTCAAATCAAGCTCATTCCAATTGAACGAGG 1599
Query 1486 ATAGGATGGAGCATCTGTTTGGTTGCAATTCTGGAAGTTCAGCTCCAAAGGAACCTGTGA 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 ATAGGATGGAGCATCTGTTTGGTTGCAATTCTGGAAGTTCAGCTCCAAAGGAACCTGTGA 1659
Query 1546 GAAGGTCAATGATGCCTCCT-GCTGAGAATGAGAACAGAGTGCTGGATCCAAAGAAATCG 1604
|||||||| |||| ||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 1660 GAAGGTCAGTGATACCT-TTAGCTGAGAATGAGAACAGAGTGCTTGATCCAAAGAAATCG 1718
Query 1605 CAGAACATTGCAATTCTCTTAAGAGCTCTCAATGTAACACGTGAAGAAGTCTCTGAAGCT 1664
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1719 CAGAACATTGCAATTCTCTTAAGAGCTCTCAATGTAACACGTGAAGAGGTTTCCGAAGCT 1778
Query 1665 CTCACGGATGGTAATCCCGAGAGCTTAGGTGCTGAGCTTTTAGAGACTTTGGTGAAGATG 1724
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1779 CTCACGGATGGTAATCCAGAGAGCTTAGGTGCTGAGCTTCTAGAGACTTTGGTGAAGATG 1838
Query 1725 GCTCCAACAAAGGAGGAAGAGATCAAACTCCGAGAGTACTCTGGTGAAGTCTCGAAACTA 1784
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 1839 GCTCCAACCAAGGAGGAAGAGATCAAACTGCGAGAGTACTCTGGTGATGTCTCTAAACTA 1898
Query 1785 GGGACAGCTGAAAGATTCCTTAAAACCATTCTTGATATCCCTTTTGCCTTTAAAAGAGTT 1844
|| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1899 GGAACAGCTGAAAGATTCCTCAAAACCATTCTCGATATCCCTTTTGCCTTCAAAAGAGTT 1958
Query 1845 GAAGCAATGTTGTATAGAGCCAACTTTGATGCAGAAGTCAAATATCTAAGGAACTCTTTC 1904
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1959 GAAGCAATGTTGTATAGAGCCAACTTTGATGCAGAAGTCAAGTATCTAAGAAACTCTTTC 2018
Query 1905 CAGACATTAGAGGAAGCAAGCTTAGAACTAAAAGCAAGCAGACTATTCCTAAAGCTCCTT 1964
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2019 CAGACATTAGAGGAAGCAAGCTTGGAACTAAAAGCAAGCAGACTATTCCTAAAGCTCCTC 2078
Query 1965 GAGGCTG-TCTTAATGACTGGAAACCGAATGAACGTTGGCACGAATCGGGGAGATGCCAA 2023
||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2079 GAGGCTGTTC-TAATGACGGGAAACCGAATGAACGTTGGCACGAATCGCGGAGATGCCAT 2137
Query 2024 AGCCTTCAAACTCGATACGCTTTTAAAACTTGTAGACATCAAAGGAGTTGATGGCAAAAC 2083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138 AGCCTTCAAACTCGATACGCTTTTAAAACTTGTAGACATCAAAGGAGTTGATGGCAAAAC 2197
Query 2084 CACATTGCTTCATTTTGTCGTCCAAGAAATCACAAGAACTGAGGGAACAACAACAACAAA 2143
||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 2198 CACATTGCTTCATTTTGTCGTCCAAGAAATCACAAGATCCGAGGGAACAACGACAACAAA 2257
Query 2144 AGACGAAACCATCCTCCATGGAAACAATGACGGTTTCAGAAAGCAAGGATTACAAGTAGT 2203
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2258 AGATGAAACCATCCTCCATGGAAACAATGACGGTTTCAGAAAGCAAGGATTACAAGTAGT 2317
Query 2204 TGCTGGACTCAGTAGAGATCTGGTTAATGTGAAAAAATCAGCCGGAATGGATTTCGATGT 2263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2318 TGCTGGACTCAGTAGAGATCTGGTTAATGTGAAAAAATCAGCCGGAATGGATTTCGATGT 2377
Query 2264 ACTGAGCAGTTACGTGACAAAGCTCGAAATGGGTCTTGATAAACTCCGATCATTTCTCAA 2323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2378 ACTGAGCAGTTACGTGACAAAGCTCGAAATGGGTCTTGATAAACTCCGATCATTTCTCAA 2437
Query 2324 GACAGAGACAACTCAAGGGAAGTTCTTTGATTCGATGGAAACGTTTCTCAAAGAAGCAGA 2383
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 2438 GACAGAGACAACTCAAGGGAGGTTCTTTGATTCGATGAAAACGTTTCTCAAAGAAGCAGA 2497
Query 2384 GGAAGAGATCCGAAAGATCAAAGGAGGAGAAAGAAAAGCTTTGTCAATGGTCAAAGAAGT 2443
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2498 GGAAGAGATCCGAAAGATTAAAGGAGGAGAAAGAAAAGCTTTGTCAATGGTGAAAGAAGT 2557
Query 2444 AACAGAGTATTTCCATGGAAACGCTGCGAGAGAAGAAGCACATCCTTTAAGAATCTTCAT 2503
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2558 AACAGAGTATTTCCACGGAAACGCTGCGAGAGAAGAAGCACATCCTTTAAGAATCTTCAT 2617
Query 2504 GGTCGTGAGAGATTTTCTCGGAGTTCTCGATAATGTTTGTAAAGAAGTGAAGACGATGCA 2563
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2618 GGTGGTGAGAGATTTTCTCGGAGTTCTCGATAACGTTTGTAAAGAAGTGAAGACGATGCA 2677
Query 2564 AGAAATGTCGACGTCCATGGGTTCAGCTTCAGCTAGATCGTTCAGGATTTCAGCAACAGC 2623
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2678 AGAAATGTCGACATCGATGGGTTCAGCTTCAGCTAGATCGTTCAGGATTTCAGCAACAGC 2737
Query 2624 TTCATTACCGGTTCTTCATAGGTATAAAGCAAAACAAGACGACACAAGCTCGGATAGTGA 2683
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2738 TTCGTTACCGGTTCTTCATAGGTATAAAGCAAGACAAGACGACACAAGCTCGGATAGTGA 2797
Query 2684 ACACAGCAGCAACTCTTCTACGTGATTGAAA---CAAAAAGCTGTACAG 2729
|||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 2798 ACACAGCAGCAACTCTTCTACGTGAT-GAAAAAACAAAAAGCTGTACAG 2845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135551079986
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5