BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951478
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67400.1 | Symbols: RHS19 | root hair specific 19 | chr5:268... 1526 0.0
> AT5G67400.1 | Symbols: RHS19 | root hair specific 19 | chr5:26894856-26896488
FORWARD LENGTH=1218
Length=1218
Score = 1526 bits (826), Expect = 0.0
Identities = 954/1016 (94%), Gaps = 8/1016 (1%)
Strand=Plus/Plus
Query 19 AAATGGCGCGGTTTGGTCTGGTTCTAGTCGTGGCTCTTAG-CATCACCATCTCTATGCTC 77
||||||||||||| |||||||| |||||||| ||||||| | | ||||||||||| ||
Sbjct 39 AAATGGCGCGGTTCAGTCTGGTTGTAGTCGTGACTCTTAGTC-TTGCCATCTCTATGTTC 97
Query 78 CCGGACACAACCACTGCTCAGCTCAAAACAAATTTCTACGGGAAA-TCATGTCCAAATGT 136
|| ||||||||||||||||| |||||||| ||||||||| ||||| |||||||| |||||
Sbjct 98 CCTGACACAACCACTGCTCAACTCAAAACCAATTTCTAC-GGAAACTCATGTCCGAATGT 156
Query 137 TGAAAAAATCGTGAAACAAGTCGT-TAACCAGAAAATCAAACAGACCTTCGTCACCATCC 195
|||| ||||||||||| ||||||| || | ||||||||||||||||||||||||||||
Sbjct 157 TGAACAAATCGTGAAAAAAGTCGTCCAA-GAAAAAATCAAACAGACCTTCGTCACCATCC 215
Query 196 CAGCTACTCTCCGTCTCTTCTTCCACGATTGCTTCGTCAATGGATGTGATGCATCGGTCA 255
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 216 CAGCTACTCTCCGCCTCTTCTTCCACGATTGCTTCGTCAATGGATGTGATGCGTCGGTCA 275
Query 256 TGATTCAGTCAACGCCTAACAACAAAGCCGAGAAGGATCATCCAGACAATCTTTCTTTGG 315
||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 276 TGATTCAATCAACGCCTACCAACAAAGCCGAGAAGGATCATCCAGACAATATTTCTTTGG 335
Query 316 CCGGAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTATTGACGCTATCCCAAGTT 375
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 336 CCGGAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTCTTGACGCTATCCCAAGTT 395
Query 376 GCAAAAACAAAGTCTCTTGTGCTGATATTCTTACTTTAGCCACCCGAGATGTTGTTGTCG 435
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 396 GCAAAAACAAAGTCTCTTGTGCTGATATTCTTGCTTTAGCCACCCGTGATGTTGTTGTCG 455
Query 436 CCGCCGGAGGACCGTCTTACACGGTGGAGCTCGGAAGGTTTGATGGTTTGGTGTCGACTG 495
||||| ||| ||||| ||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 456 CCGCCAAAGGTCCGTCGTACGCAGTGGAACTCGGAAGGTTTGATGGTTTGGTGTCGACTG 515
Query 496 CGGCTAGCGTTAACGGAAACTTGCCAGGACCAAATTTCAAAGTTACAGAACTTAACGCGC 555
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct 516 CGGCTAGCGTTAACGGAAACTTGCCCGGACCAAATAACAAAGTTACAGAACTTAACAAGC 575
Query 556 TTTTTGCGAAAAACAAACTTACCCAAGAGGACATGATCGCTCTTTCAGCGGCTCACACAC 615
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TTTTTGCCAAAAACAAACTTACCCAAGAGGACATGATCGCTCTTTCAGCGGCTCACACAC 635
Query 616 TTGGATTCGCTCATTGTGGCAAAGTGTTCAACAGAATCTACAACTTCAACCGCACACACT 675
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 636 TTGGATTCGCCCATTGTGGCAAAGTGTTCAACAGAATCTACAACTTCAACCTCACACACG 695
Query 676 CCGTTGACCCAACTATAAACAAAGCCTACGCTAAAGAACTACAGTTGGCTTGCCCCAAGA 735
|||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 696 CCGTTGACCCAACTCTAAACAAAGCCTACGCTAAAGAACTTCAGTTGGCTTGTCCCAAGA 755
Query 736 AAGTTGACCCAAGAATCGCCATCAACATGGACCCAACCACTCCAAGA-AAGTTCGACAAC 794
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 756 CAGTTGACCCAAGAATCGCCATCAACATGGACCCAACCACTCCAAGACAA-TTCGACAAC 814
Query 795 ATTTACTTCAAGAATCTGCAACAAGGCAAAGGACTCTTCACTTCCGACCAAGTTCTCTTC 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATTTACTTCAAGAATCTGCAACAAGGCAAAGGACTCTTCACTTCCGACCAAGTTCTCTTC 874
Query 855 ACCGATGGTCGCTCAAGGCCCACCGTTAACGATTGGGCCAAGGACCCTGTTGCTTTCAAC 914
|||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 875 ACCGATGGTCGCTCAAAGCCCACCGTTAACGATTGGGCCAAGAATTCTGTTGCTTTCAAC 934
Query 915 AAGGCTTTTGTAACCGCTATGACCAAACTCGGCCGCGTTGGTGTTAAGACTAGACGCAAC 974
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 935 AAGGCTTTCGTAACCGCTATGACCAAACTCGGCCGCGTTGGCGTTAAGACTAGACGCAAC 994
Query 975 GGTAACATCCGTCGTGACTGTGGCGCCTTTAACTGATTTTCCTTTTTGGGTTTTGT 1030
|||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 995 GGTAACATTCGTCGTGACTGTGGTGCCTTTAACTGATCATCCTTTTTGGGTTTTGT 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50485317735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5