BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951478 Length=1030 Score E Sequences producing significant alignments: (Bits) Value AT5G67400.1 | Symbols: RHS19 | root hair specific 19 | chr5:268... 1526 0.0 > AT5G67400.1 | Symbols: RHS19 | root hair specific 19 | chr5:26894856-26896488 FORWARD LENGTH=1218 Length=1218 Score = 1526 bits (826), Expect = 0.0 Identities = 954/1016 (94%), Gaps = 8/1016 (1%) Strand=Plus/Plus Query 19 AAATGGCGCGGTTTGGTCTGGTTCTAGTCGTGGCTCTTAG-CATCACCATCTCTATGCTC 77 ||||||||||||| |||||||| |||||||| ||||||| | | ||||||||||| || Sbjct 39 AAATGGCGCGGTTCAGTCTGGTTGTAGTCGTGACTCTTAGTC-TTGCCATCTCTATGTTC 97 Query 78 CCGGACACAACCACTGCTCAGCTCAAAACAAATTTCTACGGGAAA-TCATGTCCAAATGT 136 || ||||||||||||||||| |||||||| ||||||||| ||||| |||||||| ||||| Sbjct 98 CCTGACACAACCACTGCTCAACTCAAAACCAATTTCTAC-GGAAACTCATGTCCGAATGT 156 Query 137 TGAAAAAATCGTGAAACAAGTCGT-TAACCAGAAAATCAAACAGACCTTCGTCACCATCC 195 |||| ||||||||||| ||||||| || | |||||||||||||||||||||||||||| Sbjct 157 TGAACAAATCGTGAAAAAAGTCGTCCAA-GAAAAAATCAAACAGACCTTCGTCACCATCC 215 Query 196 CAGCTACTCTCCGTCTCTTCTTCCACGATTGCTTCGTCAATGGATGTGATGCATCGGTCA 255 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 216 CAGCTACTCTCCGCCTCTTCTTCCACGATTGCTTCGTCAATGGATGTGATGCGTCGGTCA 275 Query 256 TGATTCAGTCAACGCCTAACAACAAAGCCGAGAAGGATCATCCAGACAATCTTTCTTTGG 315 ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 276 TGATTCAATCAACGCCTACCAACAAAGCCGAGAAGGATCATCCAGACAATATTTCTTTGG 335 Query 316 CCGGAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTATTGACGCTATCCCAAGTT 375 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 336 CCGGAGATGGATTTGACGTTGTGATCAAAGCCAAGAAAGCTCTTGACGCTATCCCAAGTT 395 Query 376 GCAAAAACAAAGTCTCTTGTGCTGATATTCTTACTTTAGCCACCCGAGATGTTGTTGTCG 435 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 396 GCAAAAACAAAGTCTCTTGTGCTGATATTCTTGCTTTAGCCACCCGTGATGTTGTTGTCG 455 Query 436 CCGCCGGAGGACCGTCTTACACGGTGGAGCTCGGAAGGTTTGATGGTTTGGTGTCGACTG 495 ||||| ||| ||||| ||| | ||||| ||||||||||||||||||||||||||||||| Sbjct 456 CCGCCAAAGGTCCGTCGTACGCAGTGGAACTCGGAAGGTTTGATGGTTTGGTGTCGACTG 515 Query 496 CGGCTAGCGTTAACGGAAACTTGCCAGGACCAAATTTCAAAGTTACAGAACTTAACGCGC 555 ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || Sbjct 516 CGGCTAGCGTTAACGGAAACTTGCCCGGACCAAATAACAAAGTTACAGAACTTAACAAGC 575 Query 556 TTTTTGCGAAAAACAAACTTACCCAAGAGGACATGATCGCTCTTTCAGCGGCTCACACAC 615 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 TTTTTGCCAAAAACAAACTTACCCAAGAGGACATGATCGCTCTTTCAGCGGCTCACACAC 635 Query 616 TTGGATTCGCTCATTGTGGCAAAGTGTTCAACAGAATCTACAACTTCAACCGCACACACT 675 |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 636 TTGGATTCGCCCATTGTGGCAAAGTGTTCAACAGAATCTACAACTTCAACCTCACACACG 695 Query 676 CCGTTGACCCAACTATAAACAAAGCCTACGCTAAAGAACTACAGTTGGCTTGCCCCAAGA 735 |||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 696 CCGTTGACCCAACTCTAAACAAAGCCTACGCTAAAGAACTTCAGTTGGCTTGTCCCAAGA 755 Query 736 AAGTTGACCCAAGAATCGCCATCAACATGGACCCAACCACTCCAAGA-AAGTTCGACAAC 794 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 756 CAGTTGACCCAAGAATCGCCATCAACATGGACCCAACCACTCCAAGACAA-TTCGACAAC 814 Query 795 ATTTACTTCAAGAATCTGCAACAAGGCAAAGGACTCTTCACTTCCGACCAAGTTCTCTTC 854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 815 ATTTACTTCAAGAATCTGCAACAAGGCAAAGGACTCTTCACTTCCGACCAAGTTCTCTTC 874 Query 855 ACCGATGGTCGCTCAAGGCCCACCGTTAACGATTGGGCCAAGGACCCTGTTGCTTTCAAC 914 |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| Sbjct 875 ACCGATGGTCGCTCAAAGCCCACCGTTAACGATTGGGCCAAGAATTCTGTTGCTTTCAAC 934 Query 915 AAGGCTTTTGTAACCGCTATGACCAAACTCGGCCGCGTTGGTGTTAAGACTAGACGCAAC 974 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 935 AAGGCTTTCGTAACCGCTATGACCAAACTCGGCCGCGTTGGCGTTAAGACTAGACGCAAC 994 Query 975 GGTAACATCCGTCGTGACTGTGGCGCCTTTAACTGATTTTCCTTTTTGGGTTTTGT 1030 |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 995 GGTAACATTCGTCGTGACTGTGGTGCCTTTAACTGATCATCCTTTTTGGGTTTTGT 1050 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50485317735 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5