BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951486
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67350.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1269 0.0
> AT5G67350.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:26868290-26869486
REVERSE LENGTH=1197
Length=1197
Score = 1269 bits (687), Expect = 0.0
Identities = 871/955 (91%), Gaps = 32/955 (3%)
Strand=Plus/Plus
Query 8 GGAAGCTTCGAAAATGGCGAGGACTTGTACGGAAGATGATGA-AAACGCCCTTCTGATCT 66
|||||||||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||
Sbjct 45 GGAAGCTTCGAAAATGGCGATGACTTGTACGGAAGACGATGACAAA-ACCCTTTTGATCT 103
Query 67 CTCATCGCAATCAAGAAGACGA--A-GA---AGACGATG-ACATAGAAGAAGAAGCTTTG 119
|||||||| ||||||||||||| | || ||| || | | | ||||||||||||||||
Sbjct 104 CTCATCGCTATCAAGAAGACGACGATGACGTAGAAGAAGAAGA-AGAAGAAGAAGCTTTG 162
Query 120 TCTCTGTGTGATTTACCGAACGAGAACGGCGAATTACGATCGATTGTCAAAGAAGAAGAT 179
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 163 TCTCTGTGTGATTTGCCGAACGAGAAGGGCGAATTACGATCGATTGTCAAAGAAGAAGAT 222
Query 180 GAAGAATTCGATTCCGGGTTCGAATTTGGAATCGGGTCATCGTTTCGAGCCGGGTCGGAT 239
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAAGAATTCGATTCCGGATTTGAATTTGGAATCGGGTCATCGTTTCGAGCCGGGTCGGAT 282
Query 240 TCATGTGAACCAGCTCCGGAGATGAGTACGGCCGACGAATTATTCTTCAAAGGCCGAATT 299
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 283 TCATGTGAACCAGCTCCGGAGATGAGTACAGCTGATGAATTATTCTTCAAAGGCCGAATT 342
Query 300 CTGCCGTTACGTCATTCCGTCAGTTTAGACGCCGGACTTAACGAGCCGACCCGGTTAATT 359
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 343 CTGCCGTTACGTCACTCCGTCAGTTTAGACGCCGGACTTAACGAGCCGACCCGGTTGATT 402
Query 360 ACAAGATCCGAATCGGTTGAATACAGAAGAACCGG-A--ATTAGATCGGACCGGAAAATC 416
||||||||||| |||||||||| |||| ||||||| | |||||||||||||||||||||
Sbjct 403 ACAAGATCCGAGTCGGTTGAATTCAGACGAACCGGAATTATTAGATCGGACCGGAAAATC 462
Query 417 AAAAACAATTTCATCGATTATAGTCAACCAAGTCCACAACCACAGATTCGAAGATCATCG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 AAAAACAATTTCATCGATTATAGTCAACCAAGTCCACAACCACAGATTCGAAGATCATCG 522
Query 477 AGCATGACGGCTCGTGTTAACTCAATCAGAAACCCTAAATCATCTTCGATTTGGGATTTT 536
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 523 AGCATGACGGCTCGTGTGAATTCAATCAGAAACCCTAAATCATCCTCGATTTGGGATTTT 582
Query 537 CTCAGGTTAGGACTCGTCCGTACGCCGGAGATCGAACTCCGAACCACCGCCGGGAACGCG 596
|||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 583 CTCAGGCTAGGACTCGTCCGTACACCGGAGATAGAACTCCGAACCACCGCCGGAAACGCG 642
Query 597 AGATTGTCAGTGAGTCGAAACAGTAGTTGTAGTAGTACAAGCACGAGTTCGAATTCGAAG 656
| ||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct 643 AAATTGTCAGTGAGTCGGAATAGTAGCTGCAGTAGTACAAGCACGAGTTCGAATTCGAAG 702
Query 657 AAAACAGGATCTGGTGAGTCGAGATCTAGGAATCGGAGGAGAAGCTTTTTGTTTTCGGAT 716
|||| |||||| ||||| |||||||| |||||| |||||||||||||| |||| ||||||
Sbjct 703 AAAATAGGATCAGGTGAATCGAGATCGAGGAATAGGAGGAGAAGCTTTATGTTCTCGGAT 762
Query 717 TGTAAGTGTTCGGTGTCGACGGAGACGATGATGGTACCAGTGAAGATCAAAGT-T----- 770
||||| |||||||||||||||||||||| ||||| ||| |||||||| ||||| |
Sbjct 763 TGTAAATGTTCGGTGTCGACGGAGACGAAGATGGCACCTGTGAAGATTAAAGTGTCCTCC 822
Query 771 G---AGACGGAGGAGAAACAGAGGGTGATGGAAAAGAAGACGGCGAAGAAAGAGGAGAAA 827
| |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 823 GGTGAGACGGAGGAGAAACAGAGGATGATGGAGAAGAAGACGGCGAAGAAAGAAGAGAAA 882
Query 828 ACGGCGATGGCGAGGAAGAGAACGTTTGAGTGGTTAAAAGAGTTGTCACAGGTAGGTTTT 887
||||||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 883 TCGGCGATGGCGAGGAAGAGAACGTTTGAGTGGTTA------T---CACAGGTTGGTTTT 933
Query 888 GTTGTCGATCATGGAAGACGAAGCTTGGTCTGAtttttgtttttt-tCAAGAAAT 941
|| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 934 GTCGTCGATCATGGAAGACGAACCTTGGTCTGATTTTTATTTTTTCTCAAGAAAT 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5