BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951489
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67320.1 | Symbols: HOS15 | WD-40 repeat family protein | ch... 3072 0.0
> AT5G67320.1 | Symbols: HOS15 | WD-40 repeat family protein |
chr5:26857154-26861119 FORWARD LENGTH=2101
Length=2101
Score = 3072 bits (1663), Expect = 0.0
Identities = 1816/1889 (96%), Gaps = 14/1889 (1%)
Strand=Plus/Plus
Query 3 TAGGAATTGGCTGTGGAGATGTCTTCACTCACCTCCGTCGAATTGAATTTTCTGGTTTTC 62
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 97 TAGGATTTGGCTGTGGAGATGTCTTCACTTACCTCCGTCGAATTGAATTTTCTGGTTTTC 156
Query 63 CGATATCTTCAGGAATCAGGGTTTACACACTCTGCATTCACTCTAGGTTATGAGGCAGGG 122
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 157 CGATATCTTCAGGAATCAGGGTTTACACACGCTGCATTCACTCTAGGTTATGAGGCAGGG 216
Query 123 ATTAATAAATCCAACATTGATGGGAATATGGTTCCACCTGGTGCTCTTATCAAATTTGTT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 ATTAATAAATCCAACATTGATGGGAATATGGTTCCACCTGGTGCTCTTATCAAATTTGTT 276
Query 183 CAGAAAGGACTCCAGTACATGGAGATGGAAGCTAATTTGAGCAATAGTGAAGTGGACATT 242
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 CAGAAAGGTCTTCAGTACATGGAGATGGAAGCTAATTTGAGCAATAGTGAAGTGGACATT 336
Query 243 GATGAGGATTTCTCATTCTTTCAACCCTTGGATCTGATTTCAAAGGATGTTAAGGAACTG 302
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 337 GATGAGGATTTCTCATTCTTTCAACCCTTGGATCTGATTTCAAAGGATGTAAAGGAACTG 396
Query 303 CAGGATATGCTgagggaaaagaagaggaaagagagggatagggagaaggaaagagacagg 362
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 397 CAGGATATGCTGAGGGAAAAGAAGAGGAAAGAGAGGGATATGGAGAAGGAAAGAGACAGA 456
Query 363 tctaaagaaaacgataaagagGTTGAACGAGAACATGAAGGTGATCGCAACCGAGCTAAG 422
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 457 TCTAAAGAAAACGATAAAGGGGTTGAACGAGAACATGAAGGAGATCGCAACCGAGCTAAG 516
Query 423 GAAAAGGATAGGCACgagaaacagaaggaacgagagagggaaagggaaaaattggaacgt 482
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 517 GAAAAGGATAGGCACGAGAAGCAGAAGGAACGAGAGAGGGAAAGGGAAAAATTGGAACGT 576
Query 483 gaaaaggagagggaaagagagaagatagaacgagaaaaggaacgagaaagggagaagatg 542
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 577 GAAAAGGAGAGGGAAAGAGAGAAGATAGAACGAGAAAAGGAACGGGAAAGGGAGAAGATG 636
Query 543 gaacgggaaaTATTCgagagggagaaggaaagattgaaattagagaaagaaagagaaatg 602
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 637 GAACGGGAAATATTTGAGAGGGAGAAGGATAGATTGAAATTAGAGAAAGAAAGAGAAATA 696
Query 603 gaacgggagagggaaagagagaagatagagagggaaaagggccatgaaaaaCAGCTTGGA 662
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 697 GAACGGGAGAGGGAAAGAGAGAAGATAGAGAGGGAAAAGAGCCATGAAAAACAGCTTGGA 756
Query 663 GATGCTGATAGGGAAATGGTTATTGACCAAACTGACAAAGAAAATGCTGGGGATCTTGAG 722
||||||||||||||||||||||||||||||||||||||||||| |||| || | |
Sbjct 757 GATGCTGATAGGGAAATGGTTATTGACCAAACTGACAAAGAAATTGCT--GG-----G-G 808
Query 723 CATGGGCGTTCTACAGGCGCAGAACCTATGGATATCGTGATGACTCCTACATCTCTGACA 782
|| | |||||||||||||||||||||||||||| || |||||||| ||||||| ||||
Sbjct 809 -AT--G-GTTCTACAGGCGCAGAACCTATGGATATTGTTATGACTCCCACATCTCAGACA 864
Query 783 AGTCACATTCCTAGTTCTGATGTGAGGATTTTGGAAGGGCATACTTCCGAGGTTTGTGCT 842
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 865 AGTCACATTCCTAATTCTGATGTGAGGATTTTGGAAGGGCATACTTCTGAGGTTTGTGCT 924
Query 843 TGCGCATGGAGTCCCTCGGCTTCACTTCTTGCGTCAGGGTCTGGTGATGCAACAGCGCGT 902
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TGCGCATGGAGTCCCTCAGCTTCACTTCTTGCGTCAGGGTCTGGTGATGCAACAGCGCGA 984
Query 903 ATCTGGAGTATTCCGGAAGGATCATTCAAATCTGTGCATACTGGTCGGAATATCAACGCT 962
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 985 ATCTGGAGTATTCCGGAAGGATCATTCAAAGCTGTGCATACTGGTCGTAATATCAACGCT 1044
Query 963 TTAATCCTGAAGCATGCAAAAGGCAAGTCAAACGAGAAGAGCAAGGATGTGACCACTCTT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TTAATCCTGAAGCATGCAAAAGGCAAGTCAAACGAGAAGAGCAAGGATGTGACCACTCTT 1104
Query 1023 GACTGGAATGGTGAAGGGACTTTACTTGCAACTGGTTCATGTGATGGCCAAGCAAGAATC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GACTGGAATGGTGAAGGGACTTTACTTGCAACTGGTTCATGTGATGGCCAAGCAAGAATC 1164
Query 1083 TGGAATTTAAATGGTGACCTGATAAGTACTCTGAGCAAACACAAGGGACCTATTTTTTCC 1142
|||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1165 TGGACTTTAAATGGTGAACTGATAAGTACTCTTAGCAAACACAAGGGACCTATTTTTTCC 1224
Query 1143 CTTAAGTGGAACAAGAAGGGTGACTATCTTTTAACTGGCAGTGTTGATAGAACTGCTGTT 1202
|||||||||||||||||||| ||||||||| |||| || |||||||||||||||||||||
Sbjct 1225 CTTAAGTGGAACAAGAAGGGGGACTATCTTCTAACCGGTAGTGTTGATAGAACTGCTGTT 1284
Query 1203 GTTTGGGACGTAAAGGCAGAGGAGTGGAAGCAGCAATTTGAATTTCATTCAGGTCCAACA 1262
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1285 GTTTGGGACGTAAAGGCAGAGGAGTGGAAGCAACAATTTGAATTTCATTCAGGTCCAACA 1344
Query 1263 CTTGATGTTGATTGGCGCAACAATGTATCTTTTGCAACGAGTTCCACGGACAGCATGATC 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 CTTGATGTTGATTGGCGCAACAATGTATCTTTTGCAACGAGTTCCACGGACAGCATGATC 1404
Query 1323 TACTTATGTAAGATTGGAGAAACTAGGCCGGCCAAAATCTTTGCTGGGCATCAGGGTGAG 1382
||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 1405 TACTTATGTAAGATTGGAGAAACTAGGCCTGCCAAAACCTTTACTGGGCATCAGGGTGAG 1464
Query 1383 GTTAATTGCGTGAAATGGGATCCTACTGGCTCATTATTGGCCTCATGCTCAGATGACAGC 1442
|| || || |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1465 GTCAACTGTGTGAAATGGGATCCTACTGGTTCATTATTGGCCTCATGCTCAGATGATAGT 1524
Query 1443 ACTGCTAAGATATGGAATATAAAGCAGAA-CACCTTTGTTCATGACCTCCGAGAGCATAC 1501
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1525 ACTGCTAAGATATGGAATATAAAACA-AAGCACCTTTGTTCATGACCTCCGAGAGCATAC 1583
Query 1502 TAAGGAAATTTATACAATCAGATGGAGCCCGACAGGACCAGGAACTAACAATCCTAACAA 1561
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1584 TAAGGAAATTTATACAATCAGATGGAGCCCTACAGGACCAGGAACTAACAATCCTAACAA 1643
Query 1562 ACAGCTAACTCTTGCGAGTGCATCATTTGACTCATCAGTAAAGCTATGGGATGCAGAACT 1621
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1644 ACAGCTAACTCTTGCAAGTGCATCATTTGACTCAACAGTAAAGCTATGGGATGCAGAACT 1703
Query 1622 CGGAAAGATGCTATGTAGTTTCAACGGACACAGGGAACCGGTATACTCACTGGCATTTAG 1681
||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 1704 CGGGAAGATGCTCTGTAGTTTCAATGGACACAGGGAACCGGTTTACTCACTGGCGTTTAG 1763
Query 1682 TCCAAACGGGGAGTACATAGCGAGTGGGTCTTTGGACAGATCGATACACATATGGTCGAT 1741
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1764 TCCAAACGGGGAGTACATAGCGAGTGGGTCTTTGGACAAATCGATACACATATGGTCGAT 1823
Query 1742 AAAAGAAGGTAAAATCGTAAAGACATACACAGGAAATGGAGGGATATTCGAAGTGTGTTG 1801
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 TAAAGAAGGTAAAATCGTAAAGACATACACAGGAAATGGAGGGATATTCGAAGTGTGTTG 1883
Query 1802 GAATAAAGAAGGTAACAAAATCGCAGCTTGCTTTGCTGATAACTCAGTCTGCGTTCTTGA 1861
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1884 GAACAAAGAAGGTAACAAAATCGCAGCTTGCTTCGCTGATAACTCAGTTTGCGTTCTTGA 1943
Query 1862 TTTCAGAATGTAGTTTTCTTAACTGTAGT 1890
|||||||||||||||||||||| ||||||
Sbjct 1944 TTTCAGAATGTAGTTTTCTTAATTGTAGT 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93824818605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5