BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951491
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67300.1 | Symbols: ATMYBR1, ATMYB44, MYBR1, MYB44 | myb dom... 1491 0.0
> AT5G67300.1 | Symbols: ATMYBR1, ATMYB44, MYBR1, MYB44 | myb domain
protein r1 | chr5:26854022-26856006 FORWARD LENGTH=1985
Length=1985
Score = 1491 bits (807), Expect = 0.0
Identities = 900/946 (95%), Gaps = 2/946 (0%)
Strand=Plus/Plus
Query 15 AAAATCAATGGCTGATAGGATTAAAGGTCCATGGAGTCCTGAAGAAGACGAGCAGCTTCG 74
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 81 AAAATCAATGGCTGATAGGATCAAAGGTCCATGGAGTCCTGAAGAAGACGAGCAGCTTCG 140
Query 75 TAGGCTTGTTGTTAAATACGGTCCGAGAAACTGGACTGTGATTAGCAAATCTATTCCCGG 134
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 141 TAGGCTTGTTGTTAAATACGGTCCAAGAAACTGGACAGTGATTAGCAAATCTATTCCCGG 200
Query 135 TAGATCGGGAAAATCGTGTCGTTTACGGTGGTGCAACCAGCTTTCGCCGCAAGTTGAGCA 194
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TAGATCGGGGAAATCGTGTCGTTTACGGTGGTGCAACCAGCTTTCGCCGCAAGTTGAGCA 260
Query 195 CCGGCCGTTTTCGGCGGAGGAAGACGAGACGATCGCGCGTGCTCACGCTCAGTTTGGTAA 254
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 261 TCGGCCGTTTTCGGCTGAGGAAGACGAGACGATCGCACGTGCTCACGCTCAGTTCGGTAA 320
Query 255 TAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGACAACGCCGTGAAGAATCA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGACAACGCCGTGAAGAATCA 380
Query 315 CTGGAACTCGACGCTCAAGAGGAAATGCGGTGGTTACGACCATCGGGGTTTCGATGGTTC 374
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 381 CTGGAACTCGACGCTCAAGAGGAAATGCGGCGGTTACGACCATCGGGGTTACGATGGTTC 440
Query 375 GGAGGATCATCGGCCGGTTAAGAGATCGGTGAGTGCTGGATCTCCTCCTGTTGTTACTGG 434
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 441 GGAGGATCATCGGCCGGTTAAGAGATCGGTGAGTGCGGGATCTCCACCTGTTGTTACTGG 500
Query 435 GCTTTATATGAGCCCAGGAAGCCCAACTGGATCTGACGTCAGTGATTCAAGTACAATTCC 494
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 501 GCTTTACATGAGCCCAGGAAGCCCAACTGGATCTGATGTCAGTGATTCAAGTACTATCCC 560
Query 495 GATATTACCCTCTGTTGAGCTTTTCAAGCCGGTGCCTAGACCTGGTGCTGTTGTGTTACC 554
||||||||| || ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 561 GATATTACCTTCCGTTGAGCTTTTCAAGCCTGTGCCTAGACCTGGTGCTGTTGTGCTACC 620
Query 555 GCTTCCCATTGAAACGTCGTCGTCTTCTGCTGATCCACCGACTTCGTTAAGTTTGTCACT 614
|||||| || ||||||||||| ||||| | ||||||||||||||||||||| ||||||||
Sbjct 621 GCTTCCTATCGAAACGTCGTCTTCTTCCGATGATCCACCGACTTCGTTAAGCTTGTCACT 680
Query 615 TCCTGGTGCTGACGTAAGCGAGGAGTCAAACCGTAGCCATGAGTCAACGAATATCAATAA 674
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 681 TCCTGGTGCCGACGTAAGCGAGGAGTCAAACCGTAGCCACGAGTCAACGAATATCAACAA 740
Query 675 CACCACTTCGAGCCGCCACAACAACAACAACACGGTGTCGTTTTTGCCTTTTAGTGGGGG 734
|||||||||||||||||||||| ||||||| |||||||||||| |||| |||||||| ||
Sbjct 741 CACCACTTCGAGCCGCCACAACCACAACAATACGGTGTCGTTTATGCCGTTTAGTGGTGG 800
Query 735 GTTTAGAGGTGCGATTGAGGATATGGGGAAGTCTTTTCCCGGTAACGGCGGCGAGTTTAT 794
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 801 GTTTAGAGGTGCGATTGAGGAAATGGGGAAGTCTTTTCCCGGTAACGGAGGCGAGTTTAT 860
Query 795 GGCGGTGGTGCAAGAGATGATTAAGGCGGAAGTGAGAAGTTACATGACGGAGATGCAGA- 853
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 861 GGCGGTGGTGCAAGAGATGATTAAGGCGGAAGTGAGGAGTTACATGACGGAGATGCA-AC 919
Query 854 GAAACAATGGTGGTGGATTCGTCGGAGGATTCAAGGATAATGGCATGATTCCGATGAGTC 913
| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 920 GGAACAATGGTGGCGGATTCGTCGGAGGATTCATTGATAATGGCATGATTCCGATGAGTC 979
Query 914 AAATTGGAGTTGGGAGAATCGAGTAGAGAGAGTGAGATTTTTAGGA 959
||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 980 AAATTGGAGTTGGGAGAATCGAGTAGACAAAGTGAGATTATTAGGA 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5