BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951495
Length=260
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67265.1 | Symbols: | unknown protein. | chr5:26839469-2683... 298 2e-80
> AT5G67265.1 | Symbols: | unknown protein. | chr5:26839469-26839836
REVERSE LENGTH=237
Length=237
Score = 298 bits (161), Expect = 2e-80
Identities = 203/222 (91%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 16 AAGGAAATGGAGACTGAAAAAATACAAGAGGATGG---ATCATCAAAAGTTGTGGTGGAA 72
|||||||||||||||||||||| | |||||||||| |||||||||||| |||||||||
Sbjct 19 AAGGAAATGGAGACTGAAAAAAGAAAAGAGGATGGATCATCATCAAAAGTGGTGGTGGAA 78
Query 73 ACGACGGAACATCGTTCTTCGGCGGGGAAAGGCTCAGAGCAAAGAAATGTAGAGGTGGTT 132
|| ||||| || ||||| ||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 79 ACAACGGAGCAACGTTCCTCGGCGGGGAAAGGCACAGAGCAAAGAAATGTACAAGTGGTT 138
Query 133 CATCAATCTCATCCCAAAACTAGCGGCGGA-GTTCTTGTCGGAGCTGCTGCTGCCGTTGA 191
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 139 CATCAATCTCATCCCAAAACTAGCGGC-GACGTTCTAGTCGGAGCTGCTGCTGCCGTTGA 197
Query 192 ATCCACCCTTAAATCTGCCAAAGAAGTCATCTCTCaaaataa 233
|||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 198 ATCCACCCTTCAATCTGCCAAAGAAGTCATCTCT-AAA-TAA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11863188764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5