BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951496
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67260.1 | Symbols: CYCD3;2 | CYCLIN D3;2 | chr5:26836148-26... 1766 0.0
AT3G50070.1 | Symbols: CYCD3;3 | CYCLIN D3;3 | chr3:18565134-18... 553 2e-156
> AT5G67260.1 | Symbols: CYCD3;2 | CYCLIN D3;2 | chr5:26836148-26837811
FORWARD LENGTH=1415
Length=1415
Score = 1766 bits (956), Expect = 0.0
Identities = 1092/1156 (94%), Gaps = 15/1156 (1%)
Strand=Plus/Plus
Query 1 TTCTTCTTCACG-gaagaagaagaagatggctttggagaaagaagaagaagCGTCACAAA 59
||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 141 TTCTTCTTC-CGTGAAGAAGAAGAAGATGGCTTTGGAGAAAGAGGAAGAAGCGTCACAAA 199
Query 60 ACGCACCGTTTTGTGTCCTTGATGGGCTCTACTGTGAGGAAGAAACCGGGTTTGTGGAAG 119
||| ||||||||||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 200 ACGGTGCGTTTTGTGTCCTTGATGGGCTCTATTGCGAGGAAGAAACCGGGTTTGT-G--G 256
Query 120 AAGGA-GATCTTGATGAC---GGAGATTTAGATTTTCTCGAGAAATCTGATGAGAGTGTC 175
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 257 -AGGACGATCTTGATGACGATGGAGATTTAGATTTTCTCGAGAAATCTGATGAGAGTGTT 315
Query 176 GTAAAGTTTCAGTTTTTACCTCTTTTGGATGTGTTTTTATGGGATGACGATGAGCTTATG 235
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||
Sbjct 316 GTAAAGTTTCAGTTTTTACCTCTTTTGGATATGTTCTTATGGGATGACGATGAGATTCTG 375
Query 236 AGTCTGATTTCGAAGGAAAACGAAACGAATCCATGTTTTGGGGAAGAAATCTTAGATGGG 295
||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 376 AGTTTGATTTCAAAGGAAAACGAAACGAATCCATGTTTTGGGGAACAAATCTTAGATGGC 435
Query 296 TTTTTGGTTTCTTGTAGAAAAGAGGCTTTAGATTGGGTTTTTAGGGTTAAATCTCATTAC 355
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 436 TTTTTGGTTTCTTGTAGGAAAGAGGCTTTAGATTGGGTTCTTAGGGTTAAATCTCATTAT 495
Query 356 GGGTTCT-CTTCATTGACGGCTATACTTGCTGTGAACTACTTCGATAGGTTTATGACAAG 414
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GGGTT-TACTTCATTGACGGCTATACTTGCTGTGAACTACTTCGATAGGTTTATGACAAG 554
Query 415 TATAAAGCTTCAGACTGATAAGCCATGGATGTCTCAGCTTGTAGCTGTGGCTTCTTTGTC 474
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 555 TATAAAGCTTCAGACTGATAAGCCATGGATGTCTCAGCTTGTTGCTGTGGCTTCTTTGTC 614
Query 475 TTTAGCTGCTAAAGTTGAAGAGATTCAAGTTCCATTACTCCTAGACCTCCAAGTGGAAGA 534
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 615 TTTAGCTGCTAAAGTTGAAGAGATTCAAGTTCCATTGCTCTTAGACCTCCAAGTGGAAGA 674
Query 535 AGCAAGATATGTCTTTGAAGCTAAGACTATACAAAGAATGGAGCTTTTGATTCTTTCTAC 594
|||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 675 AGCAAGATATCTCTTTGAAGCTAAGACGATTCAAAGAATGGAGCTTTTGATTCTTTCTAC 734
Query 595 TCTTCAATGGAGAATGCACCCTGTGACTCCAATCTCTTTCTTTGATCACATTATCCGGCG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TCTTCAATGGAGAATGCACCCTGTGACTCCAATCTCTTTCTTTGATCACATTATCCGGCG 794
Query 655 ATTTGGTTCTAAATGGCACCAGCAATTGGACTTCTTTAGGAAGTGTGAGCGTCTTCTGAT 714
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 795 ATTTGGCTCTAAATGGCACCAGCAATTAGACTTCTGTAGGAAGTGTGAGCGTCTTCTGAT 854
Query 715 CTCTGTTATTGCTGATGTGAGGTTTATGAGTTACTTCCCTTCTGTCTTAGCTACTGCAAT 774
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 855 CTCTGTTATTGCTGATACGAGGTTTATGAGGTACTTCCCTTCTGTCTTAGCTACTGCAAT 914
Query 775 AATGTTCTTTGTCATCGAGGAATTGAAACCATGTGATGAAGTTGAATACCAATCTCAAAT 834
|||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 915 AATGATCCTTGTCTTCGAGGAATTGAAGCCATGTGATGAAGTTGAATACCAATCTCAAAT 974
Query 835 AATGACTCTACTCAAAGTTAATCAGGAGAAAGTAAATGAATGCTATGAACTATTGCTGGA 894
|| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct 975 AACGACTCTACTCAAAGTCAATCAGGAGAAAGTAAATGAATGCTATGAACTGTTGTTGGA 1034
Query 895 GCACAATCCAAGCAAGAAGAGGGTGATGAATTTGCTAGATCAGGACAGTCCAAGTGGTGT 954
|||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 1035 GCACAATCCAAGCAAGAAGAGGATGATGAATTTGGTTGATCAGGACAGTCCAAGTGGTGT 1094
Query 955 CTTAGACTTTGACGACAGCTCAAATAGCTCCTGGAATGTCTC---TACTGCTTCAGTGTC 1011
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1095 ATTAGACTTTGATGACAGCTCAAATAGCTCCTGGAATGTCTCCACTACTGCTTCAGTGTC 1154
Query 1012 CTCATCATCTTCATCTCCAGAGCCTCTGCTCAAGAGAAGGAGAGTGCAGGAGCAACAAAT 1071
|||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1155 CTCATCATCTTCGTCTCCAGAGCCTCTGCTCAAGAGAAGAAGAGTTCAGGAGCAGCAAAT 1214
Query 1072 GAGATTGCCTTCAATAAATCGTATGTTTCTCGATGTGCTTAGTAGTCCTCGCTAGTACCT 1131
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 GAGATTGCCCTCAATAAACCGTATGTTTCTCGATGTGCTTAGTAGTCCTCGCTAGTACCT 1274
Query 1132 TTCTTTGATCAAATGT 1147
||||||||||||||||
Sbjct 1275 TTCTTTGATCAAATGT 1290
> AT3G50070.1 | Symbols: CYCD3;3 | CYCLIN D3;3 | chr3:18565134-18566780
REVERSE LENGTH=1385
Length=1385
Score = 553 bits (299), Expect = 2e-156
Identities = 702/887 (79%), Gaps = 66/887 (7%)
Strand=Plus/Plus
Query 281 GAAATCTTAGATG--G-GTTTTTGGTTTCT-TGTAG-AAAAGAGGCT-TTAGATTGGGTT 334
||||||||||||| | |||| |||||| | ||| | ||| ||||| || |||||| ||
Sbjct 334 GAAATCTTAGATGATGAGTTTCTGGTTT-TGTGTCGTGAAA-AGGCTCTT-GATTGGATT 390
Query 335 TTTAGGGTTAAATCTCATTACGGGTTCT-CTTCATTGACGGCTATACTT-GCTGTGAACT 392
|||| || ||||||||||| ||||| | ||||||||||||| | || ||||| || |
Sbjct 391 TTTAAAGTGAAATCTCATTATGGGTT-TAATTCATTGACGGCTCT-TTTAGCTGTTAATT 448
Query 393 ACTTCGATAGGTTTATGACAAGTATAAAGCTTCAGACTGATAAGCCATGGATGTCTCAGC 452
|||||||||||||||| ||||| | ||| ||||||| ||||||||||||||||||||||
Sbjct 449 ACTTCGATAGGTTTATTACAAGCAGGAAGTTTCAGACAGATAAGCCATGGATGTCTCAGC 508
Query 453 TT-GTAGCTGTGGCTTCTTTGTCTTTAGCTGCTAAAGTTGAAGAGATTCAAGTTCCATTA 511
|| | ||| |||||| | |||||||||||||||| ||||||||||| | ||||| ||
Sbjct 509 TTACT-GCTTTGGCTTGTCTGTCTTTAGCTGCTAAGGTTGAAGAGATCCGTGTTCCTTTT 567
Query 512 CTCCTAGACCTCCAAGTGGAAGAAGCAAGATATGTCTTTGAAGCTAAGACTATACAAAGA 571
||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 568 CTCTTAGATTTTCAAGTGGAAGAAGCAAGATATGTCTTTGAAGCTAAGACTATACAGAGA 627
Query 572 ATGGAGCTT-TTGATTCTTTCTACTCTTCAATGGAGAATGCACCCTGTGACTCCAATCTC 630
||||||||| ||| |||| ||||||||| | ||||| ||||| |||||||||||||||||
Sbjct 628 ATGGAGCTTCTTG-TTCTGTCTACTCTTGACTGGAGGATGCATCCTGTGACTCCAATCTC 686
Query 631 TTTCTTT-GATCACATTATCCGGCGATTTGG-TTCTAAATGGCACCAGCAATTGGACTTC 688
|| ||| ||||||||||| || |||| | || ||||| || || |||||||| |||
Sbjct 687 GTT-TTTCGATCACATTATTCGACGATACAGCTT-TAAATCTCATCATCAATTGGAGTTC 744
Query 689 TTTAGGA-AGTGTGAGCGTCTTC-TGA-TCTCTGTTATTGCTGATGT-GAGGTTTATGAG 744
|| || | | ||||| |||| | | |||| ||||| ||||| | ||| ||| ||||
Sbjct 745 TTGAGTAGA-TGTGAA--TCTTTATTACTCTCCATTATTCCTGAT-TCGAGATTTCTGAG 800
Query 745 TT--ACTTCCCTTCTGTCTTAGCTACTGCAATAATGTTCTTTGTCATC-GAGGAATTGAA 801
|| | | || |||||| ||||| |||||||||||| ||| ||| || ||| | |||||
Sbjct 801 TTTTAGT-CC-TTCTGTGTTAGCCACTGCAATAATGGTCTCTGTTATTAGAG-ATTTGAA 857
Query 802 -ACCATGTGATGAAGTTGAATACCAATCTCAAATAATGACTCTACTCAAAGTTAAT-CAG 859
| ||||| |||| || |||||||||||| | |||||||||||||||||| || | |
Sbjct 858 GATG-TGTGACGAAGCTGTATACCAATCTCAGCTCATGACTCTACTCAAAGTTGATTC-G 915
Query 860 GAGAAAGTAAATGAATGCTATGAACTATTGCTGGAGCACAATCCAAGCAAGAAGAGGGTG 919
||||| |||||| |||||||||| || || | || |||| |||||||||||| ||| ||
Sbjct 916 GAGAAGGTAAATAAATGCTATGAGTTAGTGTTAGACCACAGTCCAAGCAAGAAAAGGATG 975
Query 920 ATGAATT---TGCTAGATCAGGAC-AGTCCAAGT-GGTGTCTTAGA--C-T--TTGA--- 966
||||||| ||| | | | | | ||||| | | ||||| || || | | || |
Sbjct 976 ATGAATTGGATGCAACAACCCG-CTAGTCCGA-TCGGTGTGTTTGATGCGTCATTCAGTT 1033
Query 967 C-GACAGCTCAAAT-AGCTCCTGGAATGT--CT-CTACTGCTTCAGTGTCCTCATCATCT 1021
| || ||||| ||| || || ||| ||| || || ||||||||||||| || ||| |
Sbjct 1034 CTGATAGCTCGAATGAG-TCGTGGGTTGTGTCTGCTTCTGCTTCAGTGTCGTCTTCA-C- 1090
Query 1022 TCATCTCCAGAGCCTCTGCTCAAGAGAAGGAGAGTGCAGGAGCAACAAATGAGATTGCCT 1081
||||| |||||||| |||||||||| || |||||||| ||||| || ||||| | ||
Sbjct 1091 -CATCTTCAGAGCCTTTGCTCAAGAGGAGAAGAGTGCAAGAGCAGCAGATGAGGCTATCT 1149
Query 1082 TCAATAAATCGTATGTTTCTCGATGTGCTTAGTAGT---CCTCGCTA 1125
|||||||| || |||||| ||||||||||||||||| ||||||||
Sbjct 1150 TCAATAAACCGAATGTTTTTCGATGTGCTTAGTAGTAGTCCTCGCTA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5