BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951498
Length=2371
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 | ... 3238 0.0
> AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3
| chr5:26824236-26828170 REVERSE LENGTH=2639
Length=2639
Score = 3238 bits (1753), Expect = 0.0
Identities = 2182/2387 (91%), Gaps = 38/2387 (2%)
Strand=Plus/Plus
Query 8 AAAACTCTTGGTAATGGAGCATAAACTAGCTACTGCTGAGAAAAAAGTGCTAGTAGACTT 67
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct 60 AAAACTCTTGGTAATGGAGCATAAACTAGCCACTGCTGAGAAAAAATTGCTAGTAGACCT 119
Query 68 GGTGAAGCTAGTTCAGAAACGTGGTTTAGAAGGCGAAAACGGAGGTTGGAAGGAATTTCT 127
|| |||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct 120 AGTCAAGCTAGTACAGAAACGAGGTTTGGAAGGCGAGAACGGAGGATGGAAGGAATTTCT 179
Query 128 AAATGTTTACGACAAAAAATTCGGATCAAGTTTGAGTGATCCTTCGAGACGTTCCAATGA 187
||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 180 AAATGTTTACGACAAAAAATTAGGATCGAGTTTGAGTGATCCTGCGAGACGTTCCAATGA 239
Query 188 TGTGTTGGTTGCTTTTCTTTTGACCTTCAAAAAGAAAGAAGATTTGCAGCTAATAGCTAG 247
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 240 TGTTTTGGTTGCTTTTCTTTTGACATTTAAAAAGAAAGAAGATTTGCAGCTAATAGCTAG 299
Query 248 GGTTATGCAATGTGGTGCTAATCGTGAACTAATTGAGAAATTCAAGCAAGA-ATCTCCGG 306
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 300 GGTTATGCAATGTGGTGCTAATCGTGAACTAATTGAGAAATTCAAGCAAGAGA-CTCCGG 358
Query 307 ACAAAGAGACTCCTGAGCAGAGGCTAGTTCGATTGACTATTACGCATTTCCAGTACCCTA 366
| ||||||||||||||||||||||||||||||||||||||||| ||| | | || |||
Sbjct 359 ATAAAGAGACTCCTGAGCAGAGGCTAGTTCGATTGACTATTACTCATGACGATTATCCTG 418
Query 367 CAAACTATTCGTTTCCTTCCTACGCTGAGGATTGGTTTGTAACTGAACTTGGAAAGAAGA 426
||||||| |||| |||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 419 GAAACTATACGTTCCCTTCCTACGCTGAGGATTGGTATGTAACTGAGCTTGGAAAGAAGA 478
Query 427 AGTCCAAAGTGATGAAATCAACTAGAATGCTTGCTATTGATTGTGAGATGGTTACCTGTG 486
|||| |||||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 479 AGTCGAAAGTGATTAAATCTACTAGAATGCTTTCTATTGATTGTGAGATGGTTACCTGTG 538
Query 487 ATGATGGGA-CCGAGGCTGTAGTTAGAGTTGGCGCAGTGGACCGCGACTTAAAGGTGGTT 545
| ||||||| || ||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 539 AAGATGGGAGCC-AGGCTTTAGTTAGAGTTGGCGCTGTGGACCGTGACTTAAAGGTGGTT 597
Query 546 CTTGACAAGTTTGTGAAACCGGACAAAACGGTTATTAACTATAAGACTGACATTACTGGA 605
|||||||| |||||||||||||||||| | |||||| |||||||||| || |||||||||
Sbjct 598 CTTGACAAATTTGTGAAACCGGACAAACCAGTTATTGACTATAAGACGGATATTACTGGA 657
Query 606 GTTACTGCTGAGGATCTTGAGAGAGCTACTCTATCTGTAACAGATATTCAGAAAAAATTG 665
|||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 658 GTTACTGCTGAGGATCTTGAGAGAGCTACTCTTTCTGTTGCAGATATTCAAAAAAAATTG 717
Query 666 CGGAGGTTTCTTTCTCAGGGAACTATTTTGGTAGGTCACGGTTTGGATAATGATCTTAAA 725
|| |||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 718 CGTAGGTTTCTTTCTGTGGGAACTATTTTGGTAGGTCATGGTTTGCATAATGATCTTCAA 777
Query 726 GTGTTGAGGATAGATCATGCGAGAGTAATAGATACTTCATTTGTATTTGAGTTTGA-GAA 784
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 778 GTGTTGAGGATAGATCATGCGAGAGTAATAGATACTTCATATGTATTTGAGTTTGTCGA- 836
Query 785 TGCACCAAAGACTCATAGACCTTCTTTGAATAATCTATGCAAGGCTGTTTTGGGTCAAGA 844
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 837 TGCACCAAAGACTCAAAGACCTTCTTTGAATAATCTATGCAAGTCTGTTTTAGGTCAAGA 896
Query 845 ACTGAGAATGCCCGATGCTGCTCACAATTGTGTTCATGACGCAGCAGCTTCCATGAAACT 904
| || ||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 897 AGTGCGAATGGACGGTGCTGCTCACAATTGTGTTCATGACGCAGCAGCTGCCATGAAACT 956
Query 905 TGTACTTGCTGTTGTAGAAAAAGGAGTAGACACTACAATCCAAA-AATCTGAAGAAATGT 963
||||||||||| |||||||||||||| || |||| ||| ||| || |||||||||||
Sbjct 957 TGTACTTGCTGCTGTAGAAAAAGGAGCAGCCACTTTAATTCAACCAA-CTGAAGAAATGA 1015
Query 964 TGGTGGCTGAGAAGAAAAGACAGGAGGAAAGACAGGAAGCTGGTAAGACACAGCTCTTCC 1023
|||||||||| |||| ||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 1016 TGGTGGCTGAAAAGAGAAGACAGGAGGCAAGACAGGAGGCTGGTAAGGCACAGCTCTTCC 1075
Query 1024 TTCATAAAATCCCTCACTATGTTCCATCTGAAGAGTTACAAGGAGTTCTTAACGGGGACT 1083
||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| | |
Sbjct 1076 TTCATAAAATCCCTCACGATGTTCCATCTGAAGAGTTACATGGAGTTCTTAGCGGGAATT 1135
Query 1084 TCACACTCGTAGTTAAGCCACCACAAAAAGAAGGAGGTTATTCTACTGCAGTCGTTGATT 1143
||||||| || |||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 1136 TCACACTTGTTGTTAAGCCACCA-AAAAC-A-GGAGGTTATTCTACTGCAGTCGTTGATT 1192
Query 1144 TTAATAGTCCGGAAGAAGCAAATGAAGCATTTGAAAATGTTGAAGGAGACGTAGCTAAGG 1203
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TTAGTAGTCCGGAAGAAGCAAATGAAGCATTTGAAAATGTTGAAGGAGACGTAGCTAAGG 1252
Query 1204 ATAAATCAGGTTTGCCACAAAAAATGGTTACACTGAAGCTGAGTTCTGGATTAGTAGCTA 1263
||||||| |||||||||||||||| || | ||||||||||||||||||||| || ||
Sbjct 1253 ATAAATCGGGTTTGCCACAAAAAAAGGCTGTGTTGAAGCTGAGTTCTGGATTAGCAGTTA 1312
Query 1264 GTTTATAT-GTTCGTAAAATGGTTAAAGATGATTCTCTGAGTGAAATCTCTACAACCAAG 1322
|||||| | ||||||||||||||| |||||||||||| | ||||||||||||| || ||
Sbjct 1313 GTTTAT-TCGTTCGTAAAATGGTTCAAGATGATTCTCCGTGTGAAATCTCTACCTCCGAG 1371
Query 1323 AGAGCTCGAACAGAGGAGAACAATGTGAGTTCTAAGAGACAGAAGACAGAAGATGATTCT 1382
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1372 AGAGCTCGTGCAGAGGAGAACAATGTGAGTTCTAAGAGACAGAAGACGGAAGATGAAACT 1431
Query 1383 GAGGA-ACCCAAAGAAGCAAATGTAAACCAAAAAGAGGCTGATAAGACAAAGCTCTTCCT 1441
||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct 1432 GAGGAGACC-AAAGAAGCAACTGTAAACCAAAGAGAGGCTGATAAGACAAAGCTTTTCCT 1490
Query 1442 TCATAAAATCCCTCACGATGTTCCATCTCAAGAGTTACATGGAGTTCTTAACGGCGATTT 1501
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1491 TCATAAAATCCCACACGATGTTCCATCTCAAGAGTTACATGGAGTTCTTAACGGGGATTT 1550
Query 1502 CACACTCGAAGTTAAGCCACCAAAAAGAAAAGGAGGTTATTACAATGCAGTAGTTGGTTT 1561
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 1551 CACACTCGATGTTAAGCCACCAAAAAGAAAAGGAGGTTACTACAATGCAGTCGTTGATTT 1610
Query 1562 TAATAATCCAGAAGAAGCAAATAAAGCATTTGAAAATGTTGTAGGAGACGTAGTTAAGGA 1621
||||| |||||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct 1611 TAATAGTCCAGAAGAAGCAAATGAAGCATTTGAAAATGTGGAAGGAGACGTAGTTAAGGA 1670
Query 1622 GAA-AGCGGGTTTACCACAAAAAATGGTTGCGTTGAAGCTGAGTTCTGGCTCAGGAGCTA 1680
|| | ||||||| |||||||||||||||| || |||||||||||||| ||||||| ||
Sbjct 1671 TAAGA-CGGGTTTGCCACAAAAAATGGTTGTATTCAAGCTGAGTTCTGGATCAGGAGTTA 1729
Query 1681 GTTTATACGTTCGTAAAATGGTTCAAGATGATTCTCCGGGTGAAATCTCTACAAC-A-GA 1738
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1730 GTTTATATGTTCGTAAAATGGTTCATGATGATTCTCCGGGTGAAATCTCTACAACCAAGA 1789
Query 1739 G-G----A---GA--A---CAATGTGAGTTCTAAGAGACAGAAGACAGAAGATGAATCTG 1785
| | | || | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1790 GAGCTCGAACAGAGGAGAGCAATATGAGTTCTAAGAGACAGAAGACAGAAGATGAATCTG 1849
Query 1786 AGGAGACCAAAGAAGCAAATGTAAACCAAAGAGAGGCTGATAAGACAAAGCTCTTCCTTC 1845
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||
Sbjct 1850 AGGAGACCAAAGAAGCAAATGCAAAGCAAAGAGAGGCTGATAAGACAAAGCTCCTCCTTC 1909
Query 1846 ATAAAATCCCTCTCAATGTCCCATCTCAAGAGTTAAAAGGAGTTATTACCGG-CAAGTTC 1904
|||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||
Sbjct 1910 ATAAAATCCCTCTCAATGTCCCGTCTCAAGAGTTAAAAGTAGTTATTACCGGGCA-GTTC 1968
Query 1905 ACACTGGAAGTTATGCAACCAAAAAGAAAAGGAGGTTATTACAACGCATTTGTTGTTTTT 1964
||||| |||||||||| ||| |||||||||||| |||||||||| ||| ||||| ||||
Sbjct 1969 ACACTTGAAGTTATGCCACCCAAAAGAAAAGGACGTTATTACAATGCAGTTGTTACTTTT 2028
Query 1965 AATAGTCCAGAAGAAGCAAATAAAGCATTTGACAAAGTTAAAGGTGAAGCAGCTAAGGAG 2024
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 2029 AATAGTCCAGAAGAAGCAAATAAAGCATTTGAAAAAGTTAAAGGAGAAGCAGTTAAGGAG 2088
Query 2025 AAAGGGGGTTTGGCACAAAAAATGGTTGCGTTTAAGCTGAGTTCAGGATCAGGAGCCAGT 2084
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2089 AAAGGTGGTTTGGCACAAAAAATGGTTGCGTTTAAGCTGAGTTCAGGATCAGGAGCTTGT 2148
Query 2085 TTATACGTCCGTAAAATGGTTCGAGATGAATCTGAGGAGGCCGAAGAGGCAAATGCAAAC 2144
|||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 2149 TTATACGTTCGTAAAATGGTTCAAGATGAATCTGAGGAGACCAAAGAGGCAAATGCAAAC 2208
Query 2145 CATTGTGAGGAT---CATTTAAAGGAAATTGAAGAACTGAAGGAAAAACTCAAAGCTAAG 2201
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 2209 CATTGTGAGGATGATCATTTAAAAGAAATGGAAGAACTGAAGGAAAAACTCAAAGCTATG 2268
Query 2202 GACTTTGCAAACAGCTGCGAAGGTCATTCAAAAGAAATTGAAGAACTGAATCACAAACTC 2261
|| || |||| ||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 2269 GAGTTCGCAATCAGCTGCGAAGGTCATTCAAAAGAAATTGAAGAACTGAAGCAGAAGCTC 2328
Query 2262 AAAGCTAAGGAACATCAGATCCAGGCGCAGGATAAGATTATAGACAACCTCAAAATGAAA 2321
|| || |||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 2329 AATGCCAAGGAACATCAGATACAGGCTCAGGATAAGATTATAGCCAACCTCAAAATGAAA 2388
Query 2322 CTGGAGAAGAAACAGTCAAAGTCTCGGTAATGATTTTAACAGAAATC 2368
|||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2389 CTGGAGAAGAAACAGTCAAAGTCTCGGTCATGATTT-AACAGAAATC 2434
Score = 893 bits (483), Expect = 0.0
Identities = 645/722 (89%), Gaps = 16/722 (2%)
Strand=Plus/Plus
Query 1002 GCTGGTAAGACACAGCTCTTCCTTCATAAAATCCCTCACTATGTTCCATCTGAAGAGTTA 1061
|||| ||||||| |||| ||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1468 GCTGATAAGACAAAGCTTTTCCTTCATAAAATCCCACACGATGTTCCATCTCAAGAGTTA 1527
Query 1062 CAAGGAGTTCTTAACGGGGACTTCACACTCGTA-GTTAAGCCACCACAAAA-AGAAGGAG 1119
|| ||||||||||||||||| |||||||||| | |||||||||||| |||| | ||||||
Sbjct 1528 CATGGAGTTCTTAACGGGGATTTCACACTCG-ATGTTAAGCCACCA-AAAAGAAAAGGAG 1585
Query 1120 GTTATTCTAC--TGCAGTCGTTGATTTTAATAGTCCGGAAGAAGCAAATGAAGCATTTGA 1177
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1586 GTTA--CTACAATGCAGTCGTTGATTTTAATAGTCCAGAAGAAGCAAATGAAGCATTTGA 1643
Query 1178 AAATGTTGAAGGAGACGTAGCTAAGGATAA-ATCAGGTTTGCCACAAAAAATGGTTACAC 1236
|||||| ||||||||||||| ||||||||| | | ||||||||||||||||||||| |
Sbjct 1644 AAATGTGGAAGGAGACGTAGTTAAGGATAAGA-CGGGTTTGCCACAAAAAATGGTTGTAT 1702
Query 1237 TGAAGCTGAGTTCTGGATTAGTAGCTAGTTTATATGTTCGTAAAATGGTTAAAGATGATT 1296
| |||||||||||||||| || || ||||||||||||||||||||||||| | |||||||
Sbjct 1703 TCAAGCTGAGTTCTGGATCAGGAGTTAGTTTATATGTTCGTAAAATGGTTCATGATGATT 1762
Query 1297 CTCTGAGTGAAATCTCTACAACCAAGAGAGCTCGAACAGAGGAGAACAATGTGAGTTCTA 1356
||| | ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1763 CTCCGGGTGAAATCTCTACAACCAAGAGAGCTCGAACAGAGGAGAGCAATATGAGTTCTA 1822
Query 1357 AGAGACAGAAGACAGAAGATGATTCTGAGGA-ACCCAAAGAAGCAAATGTAAACCAAAAA 1415
|||||||||||||||||||||| |||||||| ||| ||||||||||||| ||| |||| |
Sbjct 1823 AGAGACAGAAGACAGAAGATGAATCTGAGGAGACC-AAAGAAGCAAATGCAAAGCAAAGA 1881
Query 1416 GAGGCTGATAAGACAAAGCTCTTCCTTCATAAAATCCCTCACGATGTTCCATCTCAAGAG 1475
||||||||||||||||||||| |||||||||||||||||| | |||| || |||||||||
Sbjct 1882 GAGGCTGATAAGACAAAGCTCCTCCTTCATAAAATCCCTCTCAATGTCCCGTCTCAAGAG 1941
Query 1476 TTACATGGAGTTCTTAACGG-CGATTTCACACTCGAAGTTAAGCCACCAAAAAGAAAAGG 1534
||| | | |||| ||| ||| | | |||||||| ||||||| |||||| |||||||||||
Sbjct 1942 TTAAAAGTAGTTATTACCGGGC-AGTTCACACTTGAAGTTATGCCACCCAAAAGAAAAGG 2000
Query 1535 AGGTTATTACAATGCAGTAGTTGGTTTTAATAATCCAGAAGAAGCAAATAAAGCATTTGA 1594
| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 2001 ACGTTATTACAATGCAGTTGTTACTTTTAATAGTCCAGAAGAAGCAAATAAAGCATTTGA 2060
Query 1595 AAATGTTGTAGGAGACGTAGTTAAGGAGAAAGCG-GGTTTACCACAAAAAATGGTTGCGT 1653
||| ||| |||||| | |||||||||||||| | ||||| ||||||||||||||||||
Sbjct 2061 AAAAGTTAAAGGAGAAGCAGTTAAGGAGAAAG-GTGGTTTGGCACAAAAAATGGTTGCGT 2119
Query 1654 TGAAGCTGAGTTCTGGCTCAGGAGCTAGTTTATACGTTCGTAAAATGGTTCAAGATGATT 1713
| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2120 TTAAGCTGAGTTCAGGATCAGGAGCTTGTTTATACGTTCGTAAAATGGTTCAAGATGAAT 2179
Query 1714 CT 1715
||
Sbjct 2180 CT 2181
Score = 749 bits (405), Expect = 0.0
Identities = 621/722 (86%), Gaps = 28/722 (4%)
Strand=Plus/Plus
Query 1416 GAGGCTGATAAGACAAAGCTCTTCCTTCATAAAATCCCTCACGATGTTCCATCTCAAGAG 1475
||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1051 GAGGCTGGTAAGGCACAGCTCTTCCTTCATAAAATCCCTCACGATGTTCCATCTGAAGAG 1110
Query 1476 TTACATGGAGTTCTTAACGGCG-ATTTCACACTCGAAGTTAAGCCACCAAAAAGAAAAGG 1534
|||||||||||||||| ||| | |||||||||| | ||||||||||| ||| || |||
Sbjct 1111 TTACATGGAGTTCTTAGCGG-GAATTTCACACTTGTTGTTAAGCCACC--AAA-AACAGG 1166
Query 1535 AGGTTATTAC-AATGCAGTAGTTGGTTTTAATAATCCAGAAGAAGCAAATAAAGCATTTG 1593
|||||||| | | |||||| |||| ||||| || ||| |||||||||||| |||||||||
Sbjct 1167 AGGTTATT-CTACTGCAGTCGTTGATTTTAGTAGTCCGGAAGAAGCAAATGAAGCATTTG 1225
Query 1594 AAAATGTTGTAGGAGACGTAGTTAAGGAGAAAGCGGGTTTACCACAAAAAATGGTTGCGT 1653
||||||||| ||||||||||| |||||| ||| ||||||| |||||||||| || || ||
Sbjct 1226 AAAATGTTGAAGGAGACGTAGCTAAGGATAAATCGGGTTTGCCACAAAAAAAGGCTGTGT 1285
Query 1654 TGAAGCTGAGTTCTGGCTCAGGAGCTAGTTTATACGTTCGTAAAATGGTTCAAGATGATT 1713
|||||||||||||||| | || || |||||||| ||||||||||||||||||||||||||
Sbjct 1286 TGAAGCTGAGTTCTGGATTAGCAGTTAGTTTATTCGTTCGTAAAATGGTTCAAGATGATT 1345
Query 1714 CTCCGGGTGAAATCTCTA----C---A-A-------CAGAGGAGAACAATGTGAGTTCTA 1758
||||| |||||||||||| | | | ||||||||||||||||||||||||
Sbjct 1346 CTCCGTGTGAAATCTCTACCTCCGAGAGAGCTCGTGCAGAGGAGAACAATGTGAGTTCTA 1405
Query 1759 AGAGACAGAAGACAGAAGATGAATCTGAGGAGACCAAAGAAGCAAATGTAAACCAAAGAG 1818
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1406 AGAGACAGAAGACGGAAGATGAAACTGAGGAGACCAAAGAAGCAACTGTAAACCAAAGAG 1465
Query 1819 AGGCTGATAAGACAAAGCTCTTCCTTCATAAAATCCCTCTCAATGTCCCATCTCAAGAGT 1878
||||||||||||||||||| ||||||||||||||||| | | |||| |||||||||||||
Sbjct 1466 AGGCTGATAAGACAAAGCTTTTCCTTCATAAAATCCCACACGATGTTCCATCTCAAGAGT 1525
Query 1879 TAAAAGGAGTTATTACCGGCAAGTTCACACTGGAAGTTATGCAACCAAAAAGAAAAGGAG 1938
|| | |||||| ||| ||| | |||||||| || |||| || |||||||||||||||||
Sbjct 1526 TACATGGAGTTCTTAACGGGGATTTCACACTCGATGTTAAGCCACCAAAAAGAAAAGGAG 1585
Query 1939 GTTATTACAACGCATTTGTTGTTTTTAATAGTCCAGAAGAAGCAAATAAAGCATTTGACA 1998
|||| ||||| ||| | |||| ||||||||||||||||||||||||| |||||||||| |
Sbjct 1586 GTTACTACAATGCAGTCGTTGATTTTAATAGTCCAGAAGAAGCAAATGAAGCATTTGA-A 1644
Query 1999 AA-GTTAAAGGTGAAGCAGCTAAGGAGAA-AGGGGGTTTGGCACAAAAAATGGTTGCGTT 2056
|| || |||| || | || |||||| || | ||| |||| ||||||||||||||| ||
Sbjct 1645 AATGTGGAAGGAGACGTAGTTAAGGATAAGACGGG-TTTGCCACAAAAAATGGTTGTATT 1703
Query 2057 TAAGCTGAGTTCAGGATCAGGAGCCAGTTTATACGTCCGTAAAATGGTTCGA-GATGAAT 2115
||||||||||| |||||||||| |||||||| || ||||||||||||| | ||||| |
Sbjct 1704 CAAGCTGAGTTCTGGATCAGGAGTTAGTTTATATGTTCGTAAAATGGTTC-ATGATGATT 1762
Query 2116 CT 2117
||
Sbjct 1763 CT 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117720278025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5