BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951500
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67220.1 | Symbols: | FMN-linked oxidoreductases superfamil... 2039 0.0
> AT5G67220.1 | Symbols: | FMN-linked oxidoreductases superfamily
protein | chr5:26820121-26821964 REVERSE LENGTH=1465
Length=1465
Score = 2039 bits (1104), Expect = 0.0
Identities = 1247/1317 (95%), Gaps = 6/1317 (0%)
Strand=Plus/Plus
Query 1 TTCGTCTCCCGTCGCCAGCTCATGAAACTAAATCTCTCGAATCTCAGATTTCTACTG-AC 59
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 18 TTCGTCTTCCGTCGTCAGCTCATGAAACTAAATCTCTCGAATCTCAGATTTCTAC-GTAC 76
Query 60 CCGAAAATCTTTCATCTCCCAAACGCGAACAATGACCCAAAATCCGGATCCAAAACCTGA 119
||||||||| || |||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct 77 CCGAAAATCGTTAATCTCCCAGACGCGAGCAATGACTCAAAATCCGGATCCAAAACCTGA 136
Query 120 TCCGTCGAAAGTAGTAGACGATCTCCTCTGTTCGGAGCAGCGTGATGGGCAGATTGAGGA 179
||| ||| | || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 137 TCCATCGCAGGTTCTAGACGATATCCTCTGTTCGGAGCAGCGTGATGGGCAGATTGAGGA 196
Query 180 AACGGTCGACGCAGTGGCGGCAAGCTTGGGCTCTCCAAGTCGGGTCTTAAGCATTGATAC 239
||| |||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 197 AACAGTCGACACAGCGCCGGCGAGCTTGGGCTCTCCAAGTCGGGTCTTAAGCATTGATAC 256
Query 240 TAGGGTAGAGCGAGCTTGGGCACACTGGAAAAAACTGGGTAGACCTAAGTACATCGTTGC 299
||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 257 TAGAGTAGAGAGAGCTTGGGCACACTGGAAAAAACTGGGTAGACCCAAGTATATCGTTGC 316
Query 300 TCCAATGGTGGATAACTCTGAGCTTCCCTTTCGATTGCTCTGCCAGAAGTACGGAGCTCA 359
||||||||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct 317 TCCAATGGTTGATAACTCTGAGCTTCCGTTTAGATTGCTCTGCCAGAAATACGGAGCTCA 376
Query 360 GGCTGCTTATACTCCGATGTTGCATTCTAGGATTTTCACTGAGACTGAGAAGTATCGAAA 419
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 377 GGCTGCTTATACTCCGATGTTGCATTCTAGGATCTTCACCGAGACTGAGAAGTATAGAAA 436
Query 420 TCAGGAATTCACCACTTGTAAGGAGGACAGGCCATTGTTTGTGCAGTTCTGTGCTAATGA 479
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TCAGGAGTTCACCACCTGTAAGGAGGACAGGCCATTGTTTGTGCAGTTCTGTGCTAATGA 496
Query 480 TCCTGATACACTATTGGAAGCTGCAAAGAGAGTCGAACCTTACTGCGATTATGTTGATAT 539
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 497 TCCTGATACGTTATTGGAAGCTGCAAAGAGAGTCGAACCTTACTGCGACTATGTTGATAT 556
Query 540 CAATTTAGGGTGTCCTCAGCGTATAGCAAGACGAGGAAATTATGGTGCATTCTTGATGGA 599
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 557 CAATTTAGGGTGTCCTCAGCGTATAGCGAGGCGAGGAAATTATGGTGCATTCTTGATGGA 616
Query 600 TAATCTTCCTTTGGTGAAATCACTTGTTGAAAAGTTAGCTCAGAACCTCAATGTTCCTGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 TAATCTTCCTTTGGTGAAATCACTTGTTGAAAAGTTAGCTCAGAACCTCAATGTTCCTGT 676
Query 660 CTCCTGCAAAATTCGGATCTTCCCGAACCTTCAAGATACACTCAAGTACGCCAAGATGCT 719
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 677 CTCCTGTAAAATCCGGATCTTCCCGAACCTGGAAGATACACTCAAGTACGCCAAGATGCT 736
Query 720 AGAAGATGCTGGTTGCTCGCTGCTAGCTGTTCACGGCCGAACAAGAGATGAGAAAGACGG 779
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 737 AGAAGATGCTGGTTGCTCGCTCCTAGCTGTTCACGGGCGAACAAGAGATGAGAAAGACGG 796
Query 780 GAA-AAAGTTTAGAGCTGATTGGAGTGCTATCAAGGAAGTGAAAAACGCTTTGAGAATCC 838
||| ||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 797 GAAGAAA-TTTAGAGCTGATTGGAGCGCAATCAAGGAAGTGAAAAACGCTATGAGAATCC 855
Query 839 CTGTTCTT-GCGAATGGGAATGTAAGATGCATCGAAGATGTTGATAACTGCATCAAAGAG 897
|||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 856 CTGT-CTTAGCGAATGGGAATGTAAGATGCATCGAAGATGTCGATAACTGCATCAAAGAG 914
Query 898 ACGGGTGTCGAAGGTGTTCTTTCTGCTGAGACGCTTCTTGAAAACCCAGCGGCCTTTGCT 957
|||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 915 ACGGGTGTTGAAGGTGTTCTCTCTGCGGAGACGCTTCTTGAAAACCCGGCGGCCTTTGCT 974
Query 958 GGGTTTAGAACAGCTGAGTGGGTATCAGATAACGAAGAAGAGGGATTCGTCGATGGAGGA 1017
||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 975 GGGTTTAGAACAGCTGAATGGGCAAAAGATAACGAAGAAGAGGGATTCGTCGATGGAGGG 1034
Query 1018 TTAGATCAGGGAGATTTAGTTGTTGAGTATTTAAAGTTGTGTGAGAAGCATCCGGTTCCG 1077
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1035 TTAGACCAGGGAGATTTAGTTGTTGAGTATTTAAAGCTGTGTGAGAAGCATCCGGTTCCA 1094
Query 1078 TGGAGGATGATTCGATCTCACGTTCATAAGATGTTGGGAGAATGGTTTAGAATTCATCCA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TGGAGGATGATTCGATCTCACGTTCATAAGATGTTGGGAGAATGGTTTAGAATTCATCCA 1154
Query 1138 CAAGTTAGAGAACAGCTTAATGCTCAAAACATATTGACGTTTGAGTTTCTATACGGTCTT 1197
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1155 CAAGTTAGAGAGCAACTTAATGCTCAAAACATATTGACGTTTGAGTTTCTATACGGACTT 1214
Query 1198 GTGGATCAGCTAAGAGAGCTTGGAGGAAGAGTTCCACTCTACAAGAAAAAGAAGATAGAT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 GTGGATCAGCTAAGAGAGCTTGGAGGAAGAGTTCCACTCTACAAGAAAAAGAAGATAGAT 1274
Query 1258 ACTCTGACTCCACAAGAGTCTCCACAAAGGATTTAGAGAGTTGAAAATATACGTTCT 1314
||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1275 ACTCTGACTCCACAAGACTCTCCACAAAGGGTTTAGAGAGTTGAAACTATACGTTCT 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5