BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951503
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67190.1 | Symbols: DEAR2 | DREB and EAR motif protein 2 | c... 854 0.0
AT4G06746.1 | Symbols: RAP2.9, DEAR5 | related to AP2 9 | chr4:... 110 2e-23
> AT5G67190.1 | Symbols: DEAR2 | DREB and EAR motif protein 2 |
chr5:26809135-26809689 REVERSE LENGTH=555
Length=555
Score = 854 bits (462), Expect = 0.0
Identities = 530/562 (94%), Gaps = 8/562 (1%)
Strand=Plus/Plus
Query 21 ATGGACGGCGGCGGAGTAGCTGACGTGGCAGTCGCCGGTACGAGGAAGAGAGAGAGACCT 80
||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct 1 ATGGAAGGCGGCGGAGTTGCTGACGTGGCTGTCCCCGGTACGAGGAAGAGAGACAGACCT 60
Query 81 TACAAAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTCGCGGAGATTCGAGAGCCAAAC 140
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 61 TACAAAGGAATTAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATTCGTGAGCCTAAC 120
Query 141 AAACGGTCTAGGTTATGGCTTGGCTCTTACTCTACTCCGGAGGCGGCGGCGCGAGCTTAC 200
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AAGCGCTCTAGGTTATGGCTTGGCTCTTACTCTACTCCCGAGGCGGCGGCGCGAGCTTAC 180
Query 201 GACACGGCCGTTTTCTATCTTAGAGGACCTACGGCGAGACTTAACTTCCCTGAGCTTCTT 260
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GACACGGCGGTTTTCTATCTTAGAGGACCTACGGCGAGGCTTAACTTCCCTGAGCTTCTT 240
Query 261 CCTGGAGAGAAATTCTCCGATGAGGATATGTCGGCTGCGACGATCAGGAAAAAAGCGACG 320
||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||| |||
Sbjct 241 CCTGGGGAGAAATTCTCCGACGAGGATATGTCGGCTGCGACCATCAGGAAGAAAGCCACG 300
Query 321 GAGGTCGGTGCTCAGGTTGATGCTTTAGGCACGGCGGTGCAAAATAACCGCCACCGTGTT 380
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GAGGTCGGTGCTCAGGTTGATGCTTTGGGCACGGCGGTGCAAAATAACCGCCACCGTGTT 360
Query 381 TTTGGACAGAATCGAGATAGTGATGAT-GATAATAAGAATTTTCATCGGAATTATCAAAA 439
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 361 TTTGGTCAGAATCGAGATAGTGATG-TGGATAATAAGAATTTTCATCGGAATTATCAAAA 419
Query 440 CGGTGAGCaagaagaagaagaagaagaTGAGGATGACGATGACAAGAGATTGAAGAGTGG 499
|||||| | | ||||||||||||||| | ||||| |||||||||||||||| ||||||
Sbjct 420 CGGTGA--ACG-AGAAGAAGAAGAAGA--A-GATGAGGATGACAAGAGATTGAGGAGTGG 473
Query 500 CGGCCGGTTATTGGATCGGGTTGACTTGAATAAATTACCCGACCCGGAAAGCTCCGATGA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CGGCCGGTTATTGGATCGGGTTGACTTGAATAAATTACCCGACCCGGAAAGCTCCGATGA 533
Query 560 AGAATGGGAAAGCAAACATTAA 581
||||||||||||||||||||||
Sbjct 534 AGAATGGGAAAGCAAACATTAA 555
> AT4G06746.1 | Symbols: RAP2.9, DEAR5 | related to AP2 9 | chr4:4073962-4074545
REVERSE LENGTH=584
Length=584
Score = 110 bits (59), Expect = 2e-23
Identities = 139/177 (79%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 81 TACAAAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTCGCGGAGATTCGAGAGCCAAAC 140
||||||||||||||||||||||||||||| |||||||| || ||||| ||||||| ||
Sbjct 106 TACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATAAGAGAGCCTAAT 165
Query 141 AAACGGTCTA-GGTTATGGCTTGGCTCTTACTCTACT-CCGGAGGCGGCGGCGCGAGCTT 198
||||| || | || | |||||||| || ||| || ||| | || |||| || || |
Sbjct 166 AAACGATC-ACGGATCTGGCTTGGTTCATACAAAACCGCCGTTGCCG-CGGCACGGGCCT 223
Query 199 ACGACACGGCCGT-TTTCTATCTTA-GAGGACCTACGGCGAGACTTAACTTCCCTGA 253
|||| || || || ||| || |||| | || ||| |||||||||| || ||||||||
Sbjct 224 ACGATACCGCTGTGTTT-TA-CTTACGTGGTCCTTCGGCGAGACTCAATTTCCCTGA 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28934868672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5