BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951504

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27120.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: DDRGK dom...   159    6e-39


> AT4G27120.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: DDRGK domain 
(InterPro:IPR019153); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr4:13601970-13604339 
REVERSE LENGTH=1249
Length=1249

 Score =  159 bits (86),  Expect = 6e-39
 Identities = 102/110 (93%), Gaps = 0/110 (0%)
 Strand=Plus/Minus

Query  31   GTCTTTGTGCTTCCCGCTCTTGTCGCTTATTCTCTTTCTTCTTTGATGCTCAGGATTGGG  90
            |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |
Sbjct  440  GTCTTTGTGCTTCCCGCTCTTGTCGCTTCTTCTCTTTCTTCTTTGATGCTCTGGCTTGAG  381

Query  91   ATCCACCAGCTTCATCTTCATCTTCATCTTCACTTCCACTGATGTTTTCT  140
             ||||||||||||||||||||||||||||||||| ||||||  |||||||
Sbjct  380  TTCCACCAGCTTCATCTTCATCTTCATCTTCACTCCCACTGCCGTTTTCT  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8903339127


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5