BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951510
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67150.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2097 0.0
> AT5G67150.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:26795771-26797312 REVERSE LENGTH=1542
Length=1542
Score = 2097 bits (1135), Expect = 0.0
Identities = 1309/1394 (94%), Gaps = 7/1394 (1%)
Strand=Plus/Plus
Query 3 CATC-ATCTCCTCGAGAAAAGAAAATGGGAGCTGAAGTTA-TAGTGATCTCTAATAGCAT 60
|||| |||| |||||||||||||||||| || ||||| || ||||||||||||| |||||
Sbjct 63 CATCTATCTACTCGAGAAAAGAAAATGGCAGATGAAG-TAGTAGTGATCTCTAAGAGCAT 121
Query 61 TGTTCGACCAGAGAGCTACAGCGAGGAATCGGATCGGGTTAAGATCCATCTCTCTCCATG 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 122 TGTTCGACCAGAGAGCTACAACGAGGAATCGGATCGGGTTAAGATCCATCTCACTCCATG 181
Query 121 GGATCTCTTCTTTCTACGATCCGAATACCCACAAAGAGGTCTTCTCTTTCCTCAACCCGA 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GGATCTCTTCTTTCTTCGATCCGAATACCCACAAAGAGGTCTTCTCTTTCCTCAACCCGA 241
Query 181 CCCGGAAACCCTTATAATCTCTCAACTGAAATCCTCTCTCTCCGTCGCGTTAAAGATCTT 240
||||||||||| |||||||||||| ||||||| |||||||| ||||| || ||||||||
Sbjct 242 CCCGGAAACCCATATAATCTCTCAGTTGAAATCATCTCTCTCTGTCGCTTTGAAGATCTT 301
Query 241 TTACCCATTCGCTGGCCGTCTAGTCAAGATCGAGAACGAGGACGATGGAACGGCGTCGTT 300
|||||||||||||| ||||| |||||| |||||||||| || | |||||||||||||||
Sbjct 302 CTACCCATTCGCTGGTCGTCTTGTCAAGGTCGAGAACGAAGATGCTGGAACGGCGTCGTT 361
Query 301 TTACGTCGATTGTGATGGCTCAGGTGTCAAATTCGTCCACGCTTCAGCTAAAACTGTTTC 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 362 TTACGTCGATTGTGATGGCTCAGGTGTCAAATTCATCCACGCTTCAGCTAAATCCGTTTC 421
Query 361 GGTGAGTGATGTTTTAGAACCTGTCGATGGTAATGTGCCTGAGTTCTTGAATCGTTTTTA 420
||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 422 GGTTAGTGATGTTTTAGAACCTGTTGATAGTAATGTCCCTGAGTTCTTGAATCGTTTTT- 480
Query 421 T-CCGGCGAATAGTGTTACAAGCTTTGAAGGGATATCGGACTCGTTGATTGCGTTTCAAG 479
| ||||||||| |||||| |||| |||||| || ||||| ||||| |||||||||||||
Sbjct 481 TCCCGGCGAATGGTGTTAGGAGCTGTGAAGGAATCTCGGAGTCGTTAATTGCGTTTCAAG 540
Query 480 TAACTGAATTGAAAGATGGAGTTTTTATAGGGTTTGGTTATAATCATATGGTTGCAGATG 539
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TAACGGAATTGAAAGATGGGGTTTTTATAGGGTTTGGTTATAATCATATTGTTGCAGATG 600
Query 540 GATCTTCGTTTTGGAGTTTCTTCAATACTTGGTCGGAGATTTGCTTTAACGGGTTTGGTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 GATCTTCGTTTTGGAGTTTCTTCAATACTTGGTCGGAGATTTGCTTTAACGGGTTTGATG 660
Query 600 CCGATCATCGGAGAAAGTTTCCTCCTCTGCTTCTCCGTGGGTGGTTTCTCGACGGGATTG 659
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 661 CCGATCATCGGAGAAAGTTTCCTCCTTTGCTTCTCCGTGGATGGTTTCTCGACGGTATTG 720
Query 660 AGTATCCGATTCGAATTCCGATGTCGGAGACGGAAACACCGAACCGGGTTGTTGTTACTT 719
|||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 721 AGTATCCGATTCGAATTCCGTTACCGGAGACGGAGACACCGAACCGGGTTGTTGTTACTT 780
Query 720 CATCGTTAATACAAGAGAAGATTTTTCGAGTCACGAGTAGAAACATCTCTGAGCTTAAAG 779
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CATCGTTATTACAAGAGAAGATTTTTCGAGTCACGAGTAGAAACATCTCTGAGCTTAAAG 840
Query 780 CGAAAGCTAACGGCGAAGTTAG-TTCCGATGATCGGAAAATCTCGTCGCTTCAAGCGGTT 838
|||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 841 CGAAAGCTAACGGCGAGGTT-GACTCCGATGATCGGAAAATATCGTCGCTTCAAGCGGTT 899
Query 839 TCAGCGTTTATGTGGGGATCGATAATCAGAAACAGTGGTCTGAATCCGGAAGAAGTGATT 898
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCAGCGTATATGTGGCGATCGATAATCAGAAACAGTGGTCTGAATCCGGAAGAAGTGATT 959
Query 899 CATTGCAAGTTACTGATGGATATGAGACGAAGACTAAACCCTCCGCTTGAGAAAGAGTGT 958
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 960 CATTGCAAGTTACTGGTGGATATGAGAGGAAGACTAAACCCTCCGCTTGAGAAAGAGTGT 1019
Query 959 TTCGGGAATATGGTTGGATTCGCCACGGTGACGACCACGGTCGCGGAGATGCTAAACAAT 1018
||||| || |||| |||||||| ||||||||||| || || ||||||||||| |||||
Sbjct 1020 TTCGGTAACGTGGTCGGATTCGCGACGGTGACGACTACTGTGGCGGAGATGCTTCACAAT 1079
Query 1019 GGGCTTGGTTGGGCTGCATTGCAAATAAACAAAACTGTTGGGTCACAAACGAATGAAGAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGGCTTGGTTGGGCTGCATTGCAAATAAACAAAACTGTTGGGTCACAAACGAATGAAGAG 1139
Query 1079 TTTAGAGAGTTTGCTGAGAATTGGGTGAAGAAACCGAGTATACTGAATGCTAAGGCTTTT 1138
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 TTTAGAGAGTTTGCTGAGAATTGGGTGAAGAAACCGAGTATATTGAATGCTAAGGCTTTT 1199
Query 1139 AGTAATTGTATAACAATTGCTAGCTCTCCTCGGTTCAATGTGTATGGAAACGATTTTGGT 1198
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1200 AGTAATTCTATAACAATTGCTAGCTCTCCTCGGTTCAATGTGTATGGAAACGATTTCGGT 1259
Query 1199 TGGGGTAAACCGATTGCGGTTCGAGCTGGACCGGGAAATACTACCAATGGTAAACTCATT 1258
||||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1260 TGGGGTAAACCAATAGCGGTTCGAGCTGGACCGGGAAATACCACCGATGGTAAACTCATT 1319
Query 1259 GCTTATCCGGGGATTGAAGAAGGTAACATCGAGTTTCAAACGTGTTTATCGTCTAGTGTT 1318
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 GCTTATCCGGGGATCGAAGAAGGAAACATCGAGTTTCAAACGTGTTTATCGTCTAGTGTT 1379
Query 1319 TTGGAGAAATTATCGACTGATGCAGAGTTTTTGAAGCATGTATGTGTTGTATAAGTAAAA 1378
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1380 TTGGAAAAATTATCGACTGATGAAGAGTTTTTGAAGCATGTATGTGTTGTATAAGTAAAA 1439
Query 1379 TCATCCAAATCAAA 1392
||| ||||||||||
Sbjct 1440 TCAACCAAATCAAA 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5