BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951516

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G14320.1 | Symbols:  | Ribosomal protein S13/S18 family | ch...   231    1e-60


> AT5G14320.1 | Symbols:  | Ribosomal protein S13/S18 family | 
chr5:4617650-4618912 REVERSE LENGTH=839
Length=839

 Score =  231 bits (125),  Expect = 1e-60
 Identities = 133/137 (97%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  57   GCAACACTCTTGCTCTCCCAGCTTCAAACGCTCCCAATAAGCAGAGTTTAAGCATCAGAT  116
            ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  220  GCAACACTCTTGCCCTCCCAGCTTCAAACACTCCCAATAAGCAGAGTCTAAGCATCAGAT  279

Query  117  GTGCTCGTGTTGGTGGTGTGGAGATTCCGGCTAATAAGAGAATTGAGTACTCTCTTCAGT  176
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  GTGCTCGTGTTGGTGGAGTGGAGATTCCGGCTAATAAGAGAATTGAGTACTCTCTTCAGT  339

Query  177  ACATTCATGGGATTGGT  193
            |||||||||||||||||
Sbjct  340  ACATTCATGGGATTGGT  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9651407808


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5