BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951518
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67080.1 | Symbols: MAPKKK19 | mitogen-activated protein kin... 1519 0.0
AT3G50310.1 | Symbols: MAPKKK20 | mitogen-activated protein kin... 590 1e-167
> AT5G67080.1 | Symbols: MAPKKK19 | mitogen-activated protein kinase
kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=1035
Length=1035
Score = 1519 bits (822), Expect = 0.0
Identities = 968/1039 (93%), Gaps = 8/1039 (1%)
Strand=Plus/Plus
Query 22 ATGGAGTGGATTCGAGGAGAAACAATCGGATATGGAACTTTTTCTACAGTAAGTCTAGCG 81
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGTGGATTCGAGGAGAAACTATCGGATACGGAACTTTTTCTACAGTAAGTCTAGCG 60
Query 82 ACGCCGTCTAATAACGATTCCGGCGAACTTCCTCCGTTAATGGCCGTAAAATCTGCAGAC 141
|||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 61 ACGCGGTCTAATAACGATTCCGGCGAGTTTCCTCCGTTAATGGCTGTGAAATCTGCAGAC 120
Query 142 TCGTACGGCGCTACTTCGCTGG-AGAACGAGAAATCAGTTCTAGATAAACTCGGAGACGA 200
|| ||||||||| |||| |||| | ||||||||||||||||||||||| |||||||||||
Sbjct 121 TCATACGGCGCTGCTTCTCTGGCA-AACGAGAAATCAGTTCTAGATAATCTCGGAGACGA 179
Query 201 TTGCAACGAGATCGTACGTTGTTTCGGCGAGGATCGGACGGTCGAAAACGGAGAAGAGAT 260
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TTGCAACGAGATCGTACGGTGTTTCGGCGAGGATCGGACGGTCGAAAACGGTGAAGAGAT 239
Query 261 GCATAATTTGTTCTTGGAATACGCTTCGAGAGGAAGCTTAGAGAGTTATCTCAAGAAATT 320
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 240 GCATAATTTGTTCTTGGAATACGCTTCTAGAGGAAGCTTAGAGAGTTATCTTAAGAAATT 299
Query 321 AGGCGGTGAAGGTCTACCGGAATCCACAGTACGCCGTCACACAGGATCGGTGCTTCGAGG 380
|| |||||||||| ||||||||||||| || || || |||||||||||||||||| ||||
Sbjct 300 AGCCGGTGAAGGTGTACCGGAATCCACCGTGCGTCGCCACACAGGATCGGTGCTTAGAGG 359
Query 381 TCTACGACACATCCACGCTAACGGATTCGCTCACTGCGATTTAAAACTCGGGAATATTCT 440
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 TCTACGACACATCCACGCTAACGGATTCGCTCACTGTGATTTAAAACTCGGGAATATTCT 419
Query 441 -TTGGTTCGGTGACGGCGCCGTTAAGATTGCTGATTTTGGATTGGCGAAGAGGATTGGGG 499
||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 420 GTTG-TTCGGTGACGGCGCCGTTAAGATTGCGGATTTTGGATTGGCGAAGAGAATTGGGG 478
Query 500 AAGTAACGGCGATAAATGAAGGAGTTCAGATTAGAGGTACGCCGTTGTATATGGCGCCGG 559
| |||||||| ||||| | || || ||||||||||||||||||||||| ||||||||||
Sbjct 479 ATTTAACGGCGTTAAATTACGGTGTGCAGATTAGAGGTACGCCGTTGTACATGGCGCCGG 538
Query 560 AGTCTGTAAACGATAACGAGTACGGATCAGAGGGTGACGTGTGGGCTTTAGGATGTGCT- 618
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 539 AATCTGTTAACGATAACGAGTACGGATCAGAAGGTGACGTGTGGGCTTTAGGATGCG-TA 597
Query 619 GTAGTTGAAATGTTTAGTGGCAAAACGGCATGGAGTTTAAAAGAAGGATCGAACTTCATG 678
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 598 GTAGTTGAGATGTTTAGTGGTAAAACGGCATGGAGTTTAAAAGAAGGGTCGAACTTCATG 657
Query 679 TCGTTGTTGATACGCATCGGTGTTGGTGATGAGCTTCCGATGATTCCCGAGGAGTTGTCG 738
||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 658 TCGTTGTTGTTACGCATCGGTGTTGGTGACGAGGTTCCGATGATTCCCGAGGAGTTGTCG 717
Query 739 GAACAAGGAAAAGATTTTTTGACAAAGTGTTTCGTTAAAGATCCTAAAAAGAGATGGACG 798
|||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 718 GAACAAGGAAGAGATTTTTTGTCAAAGTGTTTCGTTAAAGATCCCAAAAAGAGATGGACG 777
Query 799 GCTGAGATGCTTCTACACCATCCATTTGTAGCCGTCGATGTTGATTACGACGGTTTAGT- 857
||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 778 GCTGAGATGCTTCTAAACCATCCATTTGTAACCGTCGATGTTGATCACGACGTTTTAGTC 837
Query 858 AGAAGAAGAAGACTTCGTTGTTAAGCTGAAAACAGAGGAAGTCTCGACATCGCCGAGATG 917
| |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 838 A-AAGAAGAAGATTTCGTTGTTAATATGAAAACAGAGGACGTCTCGACATCGCCGAGATG 896
Query 918 TCCATTCGAATTTCCCGATTGGGTTTCGGTTTCTTCCAGTTCACGAACGATCGATTCACC 977
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct 897 CCCATTCGAATTTCCCGATTGGGTTTCGGTTTCTTCCGGTTCACAAACGATCGATTCGCC 956
Query 978 AGAGGAGAGAGTTACGAGTTTGGTGACTGATATGATCCCTGATTGGTCTGTCACCAATAG 1037
|| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 GGATGAGAGAGTTGCTAGTTTGGTGACTGATATGATCCCTGATTGGTCTGTTACCAATAG 1016
Query 1038 CTGGGTCACCGTACGGTGA 1056
|||||||||||||||||||
Sbjct 1017 CTGGGTCACCGTACGGTGA 1035
> AT3G50310.1 | Symbols: MAPKKK20 | mitogen-activated protein kinase
kinase kinase 20 | chr3:18648151-18649521 REVERSE LENGTH=1371
Length=1371
Score = 590 bits (319), Expect = 1e-167
Identities = 685/853 (80%), Gaps = 59/853 (7%)
Strand=Plus/Plus
Query 18 TTCAATGGAGTGGATTCGAGGAGAAACAATCGGATAT-GGAACTTTTTCTACAGTAAGT- 75
||||||||||||| |||||||||||||||| || | | ||||| || ||||| || |||
Sbjct 194 TTCAATGGAGTGGGTTCGAGGAGAAACAATTGGGT-TCGGAACCTTCTCTACTGTCAGTA 252
Query 76 CTAGCGACGCCGTCTAATAACGATTCCGGCGAAC-TTCCT-C-CGTTAATGGCCGTAAAA 132
| |||||| |||| | || | ||||||| || ||||| | | || || || || ||
Sbjct 253 C-AGCGACAAAGTCT-AGAA--ACTCCGGCG-ACTTTCCTGCAC-TT-ATCGCTGTGAAG 305
Query 133 TCTG-CAGACT-CGTACGGCGCTACTTCGCTGGAGAACGAGAAATCAGT-TCTAGATAAA 189
|| | | || | | || ||||| |||| || ||||||||||| || | | ||| |
Sbjct 306 TC-GACGGA-TGCTTATGGCGCCGCTTCACTCTCCAACGAGAAATCGGTGT-TGGATTCA 362
Query 190 CTCGGAGACGATTGCAAC-GAGATCGTACGTTGTTTCGGCGAGGA-TCGGACGGTCGAAA 247
||| | | ||||| | |||||| |||| |||| ||||||||| || ||||| || |
Sbjct 363 CTC-G-G-TGATTG-TCCTGAGATCATACGGTGTTACGGCGAGGATTC-AACGGTGGAGA 417
Query 248 ACGGAGAAGAGATGCATAATTTGTTCTTGGAATACGCTTCGAGAGGAAGCTTAGAGAGTT 307
||||||||||||||||||| ||||| || || |||||||||||||||||||||| |||||
Sbjct 418 ACGGAGAAGAGATGCATAACTTGTTATTAGAGTACGCTTCGAGAGGAAGCTTAGCGAGTT 477
Query 308 ATC-TCAAGAAA-TTAGGCGGTGAAGGTCTACCGGAATCCACAGTACGCCGTCACACAGG 365
| | | |||||| || |||||||| ||| ||||||| ||||| || || || ||||||||
Sbjct 478 A-CATGAAGAAACTT-GGCGGTGAGGGTTTACCGGAGTCCACCGTGCGTCGCCACACAGG 535
Query 366 ATCGGTGCTTCGA-GGTCTACGACACATCCACGCTAACGGATTCGCTCACTGCGATTTAA 424
||| ||||||||| ||| |||| |||||||||||||| || || || ||||||||| |||
Sbjct 536 ATCAGTGCTTCGAGGGT-TACGTCACATCCACGCTAAAGGGTTTGCACACTGCGATATAA 594
Query 425 AACTCGGGAATATTCT-TTGGTTCGGTGACGGCGCCGTTAAGATTGCTGATTTTGGATTG 483
|||||| ||||||||| || || |||||| | ||||| ||||| ||||| || |||
Sbjct 595 AACTCGCGAATATTCTGTT-ATTTAACGACGGCTCTGTTAAAATTGCCGATTTCGGTTTG 653
Query 484 GCGAAGAGGA-TTG--GG-GAAGTAACGGCGATAAATGAAGGAGT-T-CAGATTAGAGGT 537
|||| || || ||| || || |||||||| | || ||| ||| | ||||||||||
Sbjct 654 GCGATGA-GAGTTGACGGAGATTTAACGGCG-TTAA-GAAAAAGTGTGGAGATTAGAGGG 710
Query 538 ACGCCGTTGTATATGGCGCCGGAGTCTGTAAACGATAACGAGTACGGATCAGAGGGTGAC 597
|||||||| || ||||| ||||| | ||| || ||||||||||| ||||||| || ||||
Sbjct 711 ACGCCGTTATACATGGCACCGGAATGTGTTAATGATAACGAGTATGGATCAGCGGCTGAC 770
Query 598 GTGTGGGCTTTAGGATGTGCTGTAGTTGAAATGTTTAGTGGCAAAACGGCATGGAGT-TT 656
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 771 GTGTGGGCTTTAGGATGTGCTGTAGTTGAGATGTTTAGTGGCAAAACGGCATGGAGTGTT 830
Query 657 AAAAGAAGGATCGA-ACTTCATGTCG-TTGTTGATACGCATCGGTGTTGGTGATGAGCTT 714
||| |||||||| | ||||||||||| || |||||||| || ||||||||||||||| ||
Sbjct 831 AAA-GAAGGATC-ACACTTCATGTCGCTT-TTGATACGTATAGGTGTTGGTGATGAG-TT 886
Query 715 -CCGATGATTCCCGAGGA-GTTGTCGGAACAAGGAAAAGATTTTTTGACAAAGTGTTTCG 772
|||| |||||| ||| | |||||| ||| |||| || ||||||||| | |||||||| |
Sbjct 887 ACCGAAGATTCCAGAG-ATGTTGTCCGAAGAAGGCAAGGATTTTTTGTCGAAGTGTTTTG 945
Query 773 TTAAAGATCCTAA--AAAGAGATGGACGGCTGAGATGCTTCT-ACACCATCCATTTGTAG 829
|||||||||| | ||| ||||||||||||||||||||| | | ||||| | ||||||
Sbjct 946 TTAAAGATCC-AGCGAAA-AGATGGACGGCTGAGATGCTTTTGA-ACCATTCGTTTGTAA 1002
Query 830 CCGTCGATGTTGA 842
|| | ||| ||||
Sbjct 1003 CCATTGATCTTGA 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5