BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951519

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67070.1 | Symbols: RALFL34 | ralf-like 34 | chr5:26768020-2...   643    0.0  


> AT5G67070.1 | Symbols: RALFL34 | ralf-like 34 | chr5:26768020-26768846 
FORWARD LENGTH=827
Length=827

 Score =  643 bits (348),  Expect = 0.0
 Identities = 399/423 (94%), Gaps = 5/423 (1%)
 Strand=Plus/Plus

Query  1    ctctcgtttcctccaacaatctccatggcagctccgtctctcaatctcctcctcattctc  60
            |||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  77   CTCTAGTTTCCCCCAACAATCGCCATGGCAGCTTCGTCTCTCAATCTCCTCCTCATTCTC  136

Query  61   tctcttctcgtc-ttcatttcactcccgagatctgaatctctctccgataatccatctct  119
            |||||||||  | |||||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct  137  TCTCTTCTC-ACTTTCATTTCTCTCCAGAGATCTGAATCTCTTTCCGATAATCCATCTCT  195

Query  120  cGTTCTTCTACCCGACGGATTCGACTGGCCGATCTCTCACTCCGACGATTTCGACATCAT  179
            |  |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct  196  CACTCTTCTACCCGACGGATTCGACTGGCCGATCTCTCACTCCGATGAATTCGATATCAT  255

Query  180  CGACGGTGAAGAAAGCTTCGAAGTTGCGGAGGAAGACGACGGCGT---AGATCGACGGTC  236
            ||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||
Sbjct  256  CGACGGTGAAGAAAGCTTCGAAGTTACGGAGGAAGACGACGGCGTAACAGATCGACGGTC  315

Query  237  ACTGTACTGGCGGAGGACGAAGTATTACATATCGTACGGTGCATTGTCGGCGAATCGAGT  296
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  316  ATTGTACTGGCGGAGGACGAAGTATTACATATCGTACGGTGCATTGTCGGCGAATAGAGT  375

Query  297  GCCGTGTCCTCCCAGATCTGGAAGATCGTACTACACTCATAACTGCTTCAGAGCTAGAGG  356
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  376  GCCATGTCCTCCCAGATCTGGAAGATCGTACTACACTCATAACTGCTTCAGAGCTAGAGG  435

Query  357  TCCCGTTCATCCGTACAGCCGAGGCTGCTCGTCGATCACTCGATGCCGGAGATagaagaa  416
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  436  TCCCGTTCATCCGTATAGCCGAGGCTGCTCGTCGATCACTCGATGCCGGAGATAGATGAA  495

Query  417  gaa  419
            |||
Sbjct  496  GAA  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20458973843


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5