BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951522

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67040.1 | Symbols:  | Protein of unknown function (DUF295) ...   252    3e-66


> AT5G67040.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr5:26757896-26758475 REVERSE LENGTH=498
Length=498

 Score =  252 bits (136),  Expect = 3e-66
 Identities = 165/179 (92%), Gaps = 1/179 (1%)
 Strand=Plus/Plus

Query  310  AAGTAGAAGCCTTCTGTCTCACGGCAAGCATGTACCCGGGGCTTAAACCTAACTCCATCT  369
            |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  321  AAGT-GAAGCGTTCTGCCTCACGGCAAGCATGTACCCGGGGCTTAAACCTAACTCTATCT  379

Query  370  ATTACATTGGCCATGGTCTTTGTTCATACGATCTAGCCTCTGGTACGGTCCATTCCTTCA  429
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  
Sbjct  380  ATTACATTGGCCATGGTCTTGGTTCATACGATCTAACCTCTGGTACGGTCCATTCCTTTT  439

Query  430  ATCCTCCTCGGGTACCAATGCTCAACTATGTTCCTTTCTGGATCCCTTCTCATCTCTGA  488
            | |||||||  | ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct  440  ACCCTCCTCATGCACCAATGCTCAACCATGTTCCTTACTGGATCCCTTCTCATCTCTGA  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24263093001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5