BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951529

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66985.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   326    9e-89


> AT5G66985.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26743279-26743808 
FORWARD LENGTH=530
Length=530

 Score =  326 bits (176),  Expect = 9e-89
 Identities = 247/279 (89%), Gaps = 13/279 (5%)
 Strand=Plus/Plus

Query  4    TTTT-TATCTCTAGTACAATGGAGTTTGTGATTTTGGAAGGAGAGGAGAGTTTGAAAGAG  62
            |||| | |||||| ||||||||| |||| || || | |||||||||||| ||||||||| 
Sbjct  116  TTTTCTTTCTCTACTACAATGGAATTTGCGACTTCGAAAGGAGAGGAGATTTTGAAAGAT  175

Query  63   GAGCAAGTAGTGTCAAAGCAGCTACATCTGATATCGTCTGAAACGCAAACGCAAACGCAA  122
            |||| |  |||||| ||||||||||| ||||||||||||     | ||||||||||||||
Sbjct  176  GAGC-A--AGTGTCCAAGCAGCTACACCTGATATCGTCT-----G-AAACGCAAACGCAA  226

Query  123  ACGCTGAACAGAAGAGCCGTTCTAAACCGCATCCGCAACCACAAATGTATTCACAAAATC  182
            |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  227  ACGCTGAACAAAAAAGCCGTTCTAAACCGCATCCGCAACCACAAATGTATTCACAAAATC  286

Query  183  AAGAGTCTTCTCCACACCACCGCGGCTAATGACGGAGCCACCGTCGATGCTGATTAT---  239
            ||||||||||| |||||||||||||||||  |||||||||||||||| |||||||||   
Sbjct  287  AAGAGTCTTCTTCACACCACCGCGGCTAACAACGGAGCCACCGTCGACGCTGATTATTAT  346

Query  240  CGGTGGATTGATAGTGGCGATGTCTTCTCTTGTCCGTGA  278
            |||||||||||||| ||||||||||| ||||||||||||
Sbjct  347  CGGTGGATTGATAGCGGCGATGTCTTTTCTTGTCCGTGA  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13773363226


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5