BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951535
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66940.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 992 0.0
AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 58.4 9e-08
> AT5G66940.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr5:26727989-26728666 REVERSE LENGTH=678
Length=678
Score = 992 bits (537), Expect = 0.0
Identities = 632/678 (93%), Gaps = 6/678 (1%)
Strand=Plus/Plus
Query 21 ATGCCTTCTGAATTCAGTGAATCTCGTCGGATTCCTAAGCTTCCTCACGG-C--GGA-G- 75
|||||||||||||||||||||||||||||| |||||||| |||| ||||| | ||| |
Sbjct 1 ATGCCTTCTGAATTCAGTGAATCTCGTCGGGTTCCTAAGATTCCCCACGGCCAAGGAGGA 60
Query 76 -CTGTTGTGATTCCTACGGATCAACAAGAGCAGCTTCCTTGTCCTCGCTGTGAGTCAACC 134
|||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 61 TCTGTTGCGATTCCGACGGATCAACAAGAGCAGCTTTCTTGTCCTCGCTGTGAATCAACC 120
Query 135 AACACCAAGTTCTGTTACTACAACAACTACAATTTCTCACAGCCTCGTCATTTCTGCAAG 194
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 AACACCAAGTTCTGTTACTACAACAACTACAACTTCTCACAACCTCGTCATTTCTGCAAG 180
Query 195 TCTTGTCGCCGTTACTGGACTCACGGAGGTACTCTCCGTGACATTCCTGTCGGTGGTGTT 254
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 181 TCTTGTCGCCGTTACTGGACTCATGGAGGTACTCTCCGTGACATTCCCGTCGGTGGTGTT 240
Query 255 TCCCGAAAAAGCTCTAAACGTTCCCGGACTTGTTCCTCCGCTGCTACCACCACCGTTGTC 314
||||| |||||||| |||||||||||||||| |||||| || ||||||||| ||||||||
Sbjct 241 TCCCGTAAAAGCTCAAAACGTTCCCGGACTTATTCCTCTGCCGCTACCACCTCCGTTGTC 300
Query 315 GGAAGCCGGAACTTTCCCTTACAAGCGACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAAC 374
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GGAAGCCGGAACTTTCCCTTACAAGCTACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAAC 360
Query 375 GGCGTTAGCACGACGTTGAAGGGAAACGCTTCGTCGCTCTACGGCGGTTTCACCTCTTTG 434
|||| || ||||||| |||||||| ||||||||| |||| |||||||||| |||||||
Sbjct 361 GGCGGTATCACGACGGCGAAGGGAAGTGCTTCGTCGTTCTATGGCGGTTTCAGCTCTTTG 420
Query 435 ATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGTGGGTTTAATGGGCCAGAT 494
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 ATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGCGGGTTTAATGGGCCAGAT 480
Query 495 GGTTTTGGACTTGGGCTTGGCCACGGGTCGTATTTTGATGACGTCAGATATGGGCAAGGA 554
| |||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 481 GCTTTTGGTCTTGGGCTTGGTCACGGGTCGTATTATGAGGACGTCAGATATGGGCAAGGA 540
Query 555 ATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTGCAAGCCACGTG 614
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 541 ATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTACAAGCCACATT 600
Query 615 GCTCAAATACCCGCCCCGTGGCAGCTCGAAGGTCAAGAGAGCAAAGTCGGGTTCGTGTCT 674
||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 601 GCTCAAATACCCGCCACGTGGCAGTTTGAAGGTCAAGAGAGCAAAGTCGGGTTCGTGTCT 660
Query 675 GGAGACTACTTAGCGTGA 692
||||||||| ||||||||
Sbjct 661 GGAGACTACGTAGCGTGA 678
> AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:24006992-24008694 FORWARD LENGTH=1589
Length=1589
Score = 58.4 bits (31), Expect = 9e-08
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 135 AACACCAAGTTCTGTTACTACAACAACTACA 165
|||||||||||||||||||||||||||||||
Sbjct 468 AACACCAAGTTCTGTTACTACAACAACTACA 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34561093136
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5