BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951535 Length=713 Score E Sequences producing significant alignments: (Bits) Value AT5G66940.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 992 0.0 AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 58.4 9e-08 > AT5G66940.1 | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:26727989-26728666 REVERSE LENGTH=678 Length=678 Score = 992 bits (537), Expect = 0.0 Identities = 632/678 (93%), Gaps = 6/678 (1%) Strand=Plus/Plus Query 21 ATGCCTTCTGAATTCAGTGAATCTCGTCGGATTCCTAAGCTTCCTCACGG-C--GGA-G- 75 |||||||||||||||||||||||||||||| |||||||| |||| ||||| | ||| | Sbjct 1 ATGCCTTCTGAATTCAGTGAATCTCGTCGGGTTCCTAAGATTCCCCACGGCCAAGGAGGA 60 Query 76 -CTGTTGTGATTCCTACGGATCAACAAGAGCAGCTTCCTTGTCCTCGCTGTGAGTCAACC 134 |||||| |||||| ||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 61 TCTGTTGCGATTCCGACGGATCAACAAGAGCAGCTTTCTTGTCCTCGCTGTGAATCAACC 120 Query 135 AACACCAAGTTCTGTTACTACAACAACTACAATTTCTCACAGCCTCGTCATTTCTGCAAG 194 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 121 AACACCAAGTTCTGTTACTACAACAACTACAACTTCTCACAACCTCGTCATTTCTGCAAG 180 Query 195 TCTTGTCGCCGTTACTGGACTCACGGAGGTACTCTCCGTGACATTCCTGTCGGTGGTGTT 254 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 181 TCTTGTCGCCGTTACTGGACTCATGGAGGTACTCTCCGTGACATTCCCGTCGGTGGTGTT 240 Query 255 TCCCGAAAAAGCTCTAAACGTTCCCGGACTTGTTCCTCCGCTGCTACCACCACCGTTGTC 314 ||||| |||||||| |||||||||||||||| |||||| || ||||||||| |||||||| Sbjct 241 TCCCGTAAAAGCTCAAAACGTTCCCGGACTTATTCCTCTGCCGCTACCACCTCCGTTGTC 300 Query 315 GGAAGCCGGAACTTTCCCTTACAAGCGACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAAC 374 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 GGAAGCCGGAACTTTCCCTTACAAGCTACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAAC 360 Query 375 GGCGTTAGCACGACGTTGAAGGGAAACGCTTCGTCGCTCTACGGCGGTTTCACCTCTTTG 434 |||| || ||||||| |||||||| ||||||||| |||| |||||||||| ||||||| Sbjct 361 GGCGGTATCACGACGGCGAAGGGAAGTGCTTCGTCGTTCTATGGCGGTTTCAGCTCTTTG 420 Query 435 ATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGTGGGTTTAATGGGCCAGAT 494 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 421 ATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGCGGGTTTAATGGGCCAGAT 480 Query 495 GGTTTTGGACTTGGGCTTGGCCACGGGTCGTATTTTGATGACGTCAGATATGGGCAAGGA 554 | |||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| Sbjct 481 GCTTTTGGTCTTGGGCTTGGTCACGGGTCGTATTATGAGGACGTCAGATATGGGCAAGGA 540 Query 555 ATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTGCAAGCCACGTG 614 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 541 ATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTACAAGCCACATT 600 Query 615 GCTCAAATACCCGCCCCGTGGCAGCTCGAAGGTCAAGAGAGCAAAGTCGGGTTCGTGTCT 674 ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| Sbjct 601 GCTCAAATACCCGCCACGTGGCAGTTTGAAGGTCAAGAGAGCAAAGTCGGGTTCGTGTCT 660 Query 675 GGAGACTACTTAGCGTGA 692 ||||||||| |||||||| Sbjct 661 GGAGACTACGTAGCGTGA 678 > AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding family protein | chr1:24006992-24008694 FORWARD LENGTH=1589 Length=1589 Score = 58.4 bits (31), Expect = 9e-08 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 135 AACACCAAGTTCTGTTACTACAACAACTACA 165 ||||||||||||||||||||||||||||||| Sbjct 468 AACACCAAGTTCTGTTACTACAACAACTACA 498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34561093136 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5