BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951540
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66910.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 780 0.0
AT5G66900.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 568 1e-160
> AT5G66910.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:26718232-26721256 REVERSE LENGTH=2677
Length=2677
Score = 780 bits (422), Expect = 0.0
Identities = 522/570 (92%), Gaps = 8/570 (1%)
Strand=Plus/Plus
Query 680 GATATTGAAACGTTGCAATGGATTCCCTCTCGTAATTGAAGTAGTCGGCATTTCACTTAA 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 GATATTGAAACGTTGCAATGGATTCCCTCTCGTAATTGAAGTAGTCGGCATTTCACTTAA 1235
Query 740 AGGACAAGCTCTGTATTTATGGAAAGGCCAAGTGGAAAGCTGGTCTGAAGGGGAAACAAT 799
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1236 AGGACAAGCTCTGTATTTATGGAAAGGTCAAGTGGAAAGCTGGTCTGAAGGGGAAACAAT 1295
Query 800 TCTTGGTAACGCTCATACTAATGTGCTAGAACGTCTGAAGCCTAGCTTTAGTGCCCTGGA 859
||||||||||||| || ||| ||||| | |||||||| |||||||||| | || |||| |
Sbjct 1296 TCTTGGTAACGCTAATCCTACTGTGCGACAACGTCTGCAGCCTAGCTTCAATGTCCTGAA 1355
Query 860 ACCCCATCTTAAAGAGTGTTTCTTGGACATGGGTTCATTTCTTGAGGACCAAAAGATACA 919
||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1356 ACCTCATCTTAAAGAGTGTTTCATGGACATGGGTTCATTTCTTCAGGACCAAAAGATACG 1415
Query 920 TGCTTCGCTTATAATTGACATATGGGTGGAATTATATGGAAGAGGTAGTACTAGTACTAA 979
||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 1416 TGCTTCGCTTATAATTGACATATGGATGGAATTATATGGTAGAGGTAGTTCTAGTACTAA 1475
Query 980 CATGTACATGAAATACCTTAATGACCTTGCTTCCCAGAATCTGATTAAACTTGTTCCTCT 1039
|| || |||| |||||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 1476 CAAGTTCATGTTATACCTTAATGAGCTTGCTTCCCAGAATCTGCTTAAACTTGTTCATCT 1535
Query 1040 CGGGACAAATGAGTACGAAGACGGATTCTACAATGAGTTGTTAGTCACTCAACATGATAT 1099
|||||||||| || ||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 1536 CGGGACAAATAAGCGCGAAGACGGTTTTTACAATGAGTTGTTAGTCACTCAACATAATAT 1595
Query 1100 TCTGAGGGAGTTGGCTATTTTTCAAAGCGAACTGGAACCAATCCTGGAAAGaaaaaaaCT 1159
||||||||||||||||||||||||||| ||| ||||||||||| || ||||||| |||||
Sbjct 1596 TCTGAGGGAGTTGGCTATTTTTCAAAGTGAATTGGAACCAATCATGCAAAGAAAGAAACT 1655
Query 1160 AAATTTGGAGATACGAGAGGACAACTATCCGGACTG-GTGTTTGAACCTAAGGCAACCTA 1218
|||||||||||||||||||||||||| ||||||| | |||||| || | |||||||
Sbjct 1656 AAATTTGGAGATACGAGAGGACAACTTTCCGGAC-GAGTGTTTAAA--T----CAACCTA 1708
Query 1219 TTAATGCTCGACTTTTGTCTATTTCTACGG 1248
|||||||||||||||||||||| | |||||
Sbjct 1709 TTAATGCTCGACTTTTGTCTATCTATACGG 1738
Score = 551 bits (298), Expect = 1e-155
Identities = 435/500 (87%), Gaps = 14/500 (3%)
Strand=Plus/Plus
Query 1248 GTTCTTAATGTATCTTCATCAGACTATGCATTGCCAAGCTTCATTGCCGGAATGAAGAAG 1307
||||||||| | || |||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1795 GTTCTTAATATCTCCTCATTAGACTATGCATTGCCAAGCTTCATTGCTGAAATGAAGAAG 1854
Query 1308 CTGAAGGTTCTAACTATCACAAATCACGGTTTTGT-TCCAACAAGATTAAGCAATTTCTC 1366
|| |||||||| || ||| |||||||||||||| | |||| ||||||| || ||||||||
Sbjct 1855 CTAAAGGTTCTGACAATCGCAAATCACGGTTTT-TATCCAGCAAGATTGAGTAATTTCTC 1913
Query 1367 GTGTTTGAGCTCATTACCAAATTTGAAACGGATTAGATTGGAGAAAG-TTTCAGTCACTT 1425
|||| | |||||||||||||| |||||||||||||||| || |||| ||||||||||||
Sbjct 1914 GTGTCTCAGCTCATTACCAAACCTGAAACGGATTAGATTTGA-AAAGGTTTCAGTCACTT 1972
Query 1426 TGCTAGACCTTCCCCGATTGCAACTCGGCAGTCTTAAGAAGCTATC-TTCGCTCATGTGT 1484
|||| ||| |||| | |||||||||||||||||| ||||||||||| || ||||||||
Sbjct 1973 TGCTGGACATTCCTCAATTGCAACTCGGCAGTCTCAAGAAGCTATCATTTT-TCATGTGT 2031
Query 1485 AGTTTCGGTGAGGTTTTCTATGGGACTGAAGAAATAGATGTCGCTAAAGCCCTATCGAGT 1544
|||||||||||||||||||| | || ||||| ||||||||| ||||||| ||||||| |
Sbjct 2032 AGTTTCGGTGAGGTTTTCTACGACACAGAAGATATAGATGTCTCTAAAGCTCTATCGAAT 2091
Query 1545 TTACAAGAGATTGACATAGACTATTGCTATGATCTTCTTGAGTTACCTTATTGGGTCTCT 1604
||||||||||||||||||||||| |||||||||||| ||||||||| |||||| || |
Sbjct 2092 TTACAAGAGATTGACATAGACTACTGCTATGATCTTGATGAGTTACCATATTGGATCCCC 2151
Query 1605 GAAGTTGTTTCATTGAAGACCCTTAGCATCACAAACTGTGATAAGCTCTCT-ATACTTCC 1663
|||||||||||||||||||| |||||||||||||||||| | ||||||||| | ||||||
Sbjct 2152 GAAGTTGTTTCATTGAAGACACTTAGCATCACAAACTGTAACAAGCTCTCTCA-ACTTCC 2210
Query 1664 AGAAGCTTT-GGGCAACTTGAGTAAACTGGAAATGTTGAGG-TCATGTTCTTGTAAT-AA 1720
||||||| | ||| |||||||||| ||| ||| |||||||| | |||||||||| | ||
Sbjct 2211 AGAAGCTATAGGG-AACTTGAGTAGACTAGAAGTGTTGAGGATG-TGTTCTTGTA-TGAA 2267
Query 1721 TCTCACTGAGTTGCCTCAAG 1740
|||| ||||| ||||| |||
Sbjct 2268 TCTCTCTGAGCTGCCTGAAG 2287
Score = 470 bits (254), Expect = 3e-131
Identities = 403/469 (86%), Gaps = 33/469 (7%)
Strand=Plus/Plus
Query 1 TCGAATCGTTGCAAGATGTTATGGAACTACAAGATCTTAAAGACATGATCGTTGAAGCTC 60
|||||||| ||||||||| |||||||||||||||||||||||||| ||||| | ||||||
Sbjct 293 TCGAATCGATGCAAGATGGTATGGAACTACAAGATCTTAAAGACACGATCGATAAAGCTC 352
Query 61 TTGTAGTGGTTGAGGAGTGTTCACGTATCAAGAAGTGGAATATACTCTTGAAATCTAAGT 120
|| || |||||||| ||||||||| | || |||||||||||||| |||||||||| ||||
Sbjct 353 TTTTACTGGTTGAGAAGTGTTCACATGTCGAGAAGTGGAATATAATCTTGAAATCGAAGT 412
Query 121 ACACGACAAAAGTTGTGGAAATCAATAGGAAGATGTTCAAGTTCTGTCAGGTTCAACTAC 180
|||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 413 ACACGAGAAAAGTTGAGGAAATCAATAGGAAGATGCTCAAGTTCTGTCAGGTTCAACTTC 472
Query 181 AGCTTCTTCAGTTTAGGAACC-----AA---T-TG-----C-----AG----T-TTAACA 216
||||||||| |||||||||| || | || | || | ||||||
Sbjct 473 AGCTTCTTCTCTTTAGGAACCAATTGAAGTCTATGCCTTCCATGGAAGCTATTCTTAACA 532
Query 217 ATTATCTCCAGATCATCAATAAGAAGCTCGATCTTTTGAGTGTTTCTCCTCCCT-CTCCT 275
||||| |||| | |||||||||||||||||| | |||||||| ||||||| || ||||
Sbjct 533 ATTATTTCCAAAACATCAATAAGAAGCTCGACCGTTTGAGTGGTTCTCCT-GCTCCTCC- 590
Query 276 G-TT-TTCTCGAAGCGTTGTTCTGTTCCCAAGC-T--TAATACGGTTCTTGTTGGATTGG 330
| || || ||||||||||||||||||||||||| | ||||| |||||| ||||||||||
Sbjct 591 GCTTGTT-TCGAAGCGTTGTTCTGTTCCCAAGCTTGATAATATGGTTCTGGTTGGATTGG 649
Query 331 ATTGGCCATTGATGGAGCTGAAGAAGAAACTCCTTGGCAATTCAGTGGTTGTGGTGTCTG 390
||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 650 ATTGGCCATTGGTGGAGCTGAAGAAGAAACTCCTTGACAATTCCGTGGTTGTGGTGTCTG 709
Query 391 GTCCTCCTGGTTGCGGGAAGACCACGCTGGTTACTCAGCTTTGTGACGA 439
||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 710 GTCCTCCTGGTTGTGGGAAGACCACGCTGGTTACTAAGCTTTGTGACGA 758
Score = 291 bits (157), Expect = 2e-77
Identities = 208/232 (90%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 452 AGAAACTGGCTTAAGAGATCTGCTGGAGGAACTCACAAAAGATGGTCCTATATTGTTGGT 511
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 894 AGAAACTGGCTTAAGAGATCTTCTGGAGGAACTCACAAAAGATGGTCGTATATTGTTGGT 953
Query 512 GTTGGATGATGTGTGGC-GTGGATCAGAGTTCTTGCTTCGGAAATTTCAAATTGAATTAG 570
||||||||||||||||| | ||||| |||||||||||||| |||||||||||||| |||
Sbjct 954 GTTGGATGATGTGTGGCAG-GGATCCGAGTTCTTGCTTCGAAAATTTCAAATTGATTTAC 1012
Query 571 AAGGTTATAAGATGTTGGTGACTTCTCGGTTTGACTTTT-CGAGTTTATGGTCCACTTAT 629
|| ||||||||| ||||||||||||| |||||| |||| ||||||||||| |||||||
Sbjct 1013 CAGATTATAAGATTTTGGTGACTTCTCAGTTTGA-TTTTACGAGTTTATGGCCCACTTAC 1071
Query 630 CATTTGGAAACTTTGAAAGATGAAGATGCTAAAG-CCCTTCTCATTCAATGG 680
||||||| | |||||||| ||||| |||||| | ||||||||||||| |||
Sbjct 1072 CATTTGGTACCTTTGAAATATGAATATGCTAG-GTCCCTTCTCATTCAGTGG 1122
> AT5G66900.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:26714764-26717788 REVERSE LENGTH=2628
Length=2628
Score = 568 bits (307), Expect = 1e-160
Identities = 436/498 (88%), Gaps = 10/498 (2%)
Strand=Plus/Plus
Query 1248 GTTCTTAATGTATCTTCATCAGACTATGCATTGCCAAGCTTCAT-TGCCGGAATGAAGAA 1306
||||| ||| | |||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1685 GTTCTAAATCTCTCTTCATCAGACTATGCATTGCCAAGCTTCATCT-CTGGAATGAAGAA 1743
Query 1307 GCTGAAGGTTCTAACTATCACAAATCACGGTTTTGT-TCCAACAAGATTAAGCAATTTCT 1365
|||||||||||| || |||||||||||||||||| | |||| ||||||| || |||||||
Sbjct 1744 GCTGAAGGTTCTGACAATCACAAATCACGGTTTT-TATCCAGCAAGATTGAGTAATTTCT 1802
Query 1366 CGTGTTTGAGCTCATTACCAAATTTGAAACGGATTAGATTGGAGAAAGTTTCAGTCACTT 1425
||||| | |||||||||||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 1803 CGTGTCTCAGCTCATTACCAAACCTGAAACGGATTAGATTGGAAAAAGTTTCAATCACTT 1862
Query 1426 TGCTAGACCTTCCCCGATTGCAACTCGGCAGTCTTAAGAAGCTATCTTCGCTCATGTGTA 1485
|||||||| |||||| | |||||||| |||||||||||||||| |||| | |||||||||
Sbjct 1863 TGCTAGACATTCCCCAACTGCAACTCAGCAGTCTTAAGAAGCTGTCTTTGGTCATGTGTA 1922
Query 1486 GTTTCGGTGAGGTTTTCTATGGGACTGAAGAAATAGATGTCGCTAAAGCCCTATCGAGTT 1545
||||||||||||||||||| | || ||||| |||| |||| |||| || ||||||| |
Sbjct 1923 GTTTCGGTGAGGTTTTCTACGACACAGAAGATATAGTTGTCTCTAATGCTCTATCGAAAT 1982
Query 1546 TACAAGAGATTGACATAGACTATTGCTATGATCTTCTTGAGTTACCTTATTGGGTCTCTG 1605
|||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||
Sbjct 1983 TACAAGAGATTGACATAGACTACTGCTATGATCTTGATGAGTTACCGTATTGGATCTCTG 2042
Query 1606 AAGTTGTTTCATTGAAGACCCTTAGCATCACAAACTGTGATAAGCTCTCT-ATACTTCCA 1664
|| |||||||||||||||| |||||||||||||||||| | ||||||||| | |||||||
Sbjct 2043 AAATTGTTTCATTGAAGACACTTAGCATCACAAACTGTAACAAGCTCTCTCA-ACTTCCA 2101
Query 1665 GAAGCTTTGGGCAACTTGAGTAAACTGGAAATGTTGAGG-TCATGTTCTTGTAAT-AATC 1722
|||||| | ||||||||||||| ||| ||| |||||||| | ||||||| || | ||||
Sbjct 2102 GAAGCTATAGGCAACTTGAGTAGACTAGAAGTGTTGAGGCTG-TGTTCTTCTA-TGAATC 2159
Query 1723 TCACTGAGTTGCCTCAAG 1740
|| ||||| ||||| |||
Sbjct 2160 TCTCTGAGCTGCCTGAAG 2177
Score = 241 bits (130), Expect = 2e-62
Identities = 175/196 (89%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 1729 AGTTGCCTCAAGAGATTGGCAAACTAG-AGAAGCTGAAAATGATCTGGATGAGGAAGTAT 1787
||||||||||||||||||||||||| | |||| ||||||| ||||| |||||| |||| |
Sbjct 2238 AGTTGCCTCAAGAGATTGGCAAACT-GCAGAATCTGAAAAAGATCTCGATGAGAAAGTGT 2296
Query 1788 ACGGGATGCAAGTTACCGGATTCAGTGACGAACCTAGAGAATTTGGAGGTCAAATGCGAT 1847
|||||||| |||| ||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 2297 TCGGGATGCGAGTTGCCGGAGTCAGTGACGAATCTAGAGAATCTGGAGGTCAAATGCGAT 2356
Query 1848 GAAGAAACTGGATTCTTGTGGGAAAGGTTGAAGCTAAAAATGATAAATTTGAGAGTTGTC 1907
|||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||| |
Sbjct 2357 GAAGAAACTGGATTGTTGTGGGAAAGGCTGAAGCCAAAAATGAGAAATTTGAGAGTT--C 2414
Query 1908 A--AGGAGGAAATAGA 1921
| |||||||||||||
Sbjct 2415 AGGAGGAGGAAATAGA 2430
Score = 235 bits (127), Expect = 1e-60
Identities = 197/229 (86%), Gaps = 12/229 (5%)
Strand=Plus/Plus
Query 458 TGGCTTAAGAGATCTGCTGGAGGAACTCACAA-AAGATGGTCCTATATTGTTGGTGTTGG 516
|||||||||| | |||||||||||||| | || || ||||||||||||||||||||||||
Sbjct 802 TGGCTTAAGAAAACTGCTGGAGGAACTTA-AAGAAAATGGTCCTATATTGTTGGTGTTGG 860
Query 517 ATGATGTGTGGCGTGGATCAGAGTTCTTGC-TTCGGAAATTTCAAATTGAA-TTAG-AAG 573
||||||||||||| ||| | || ||||| | ||| ||||||||||||| || ||| ||
Sbjct 861 ATGATGTGTGGCGGGGAGCGGA-TTCTTTCCTTCAGAAATTTCAAATT-AAGTTACCAAA 918
Query 574 GTTATAAGATGTTGGTGACTTCTCGGTTTGACTTTTCGAGTTTATGGT-CCACTTATCAT 632
||||||||| |||||||||||||||||||||||| ||||||| || | ||| ||||| |
Sbjct 919 -TTATAAGATTTTGGTGACTTCTCGGTTTGACTTTCCGAGTTT-TGATTCCAATTATCGT 976
Query 633 TTGGAAAC-TTTGAAAGATGAAGATGCTAAAGCCCTTCTCATTCAATGG 680
||| |||| |||| ||||||| ||||||| ||||||||||||||| |||
Sbjct 977 TTG-AAACCTTTGGAAGATGATGATGCTAGAGCCCTTCTCATTCATTGG 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97238455665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5