BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951543
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66880.1 | Symbols: SNRK2-3, SNRK2.3, SRK2I | sucrose nonfer... 1823 0.0
AT3G50500.2 | Symbols: SNRK2.2 | SNF1-related protein kinase 2.... 941 0.0
> AT5G66880.1 | Symbols: SNRK2-3, SNRK2.3, SRK2I | sucrose nonfermenting
1(SNF1)-related protein kinase 2.3 | chr5:26710555-26712971
FORWARD LENGTH=1467
Length=1467
Score = 1823 bits (987), Expect = 0.0
Identities = 1071/1113 (96%), Gaps = 0/1113 (0%)
Strand=Plus/Plus
Query 1 TTTCtttttttGTGATCAGAGATGGATCGAGCTCCAGTGACAACAGGACCGCTGGATATG 60
||||| |||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||
Sbjct 122 TTTCTCTTTTTGTGATCAGAAATGGATCGAGCTCCGGTGACCACAGGACCGTTGGATATG 181
Query 61 CCAATTATGCACGACAGTGATCGATATGACTTCGTTAAGGATATTGGTTCTGGTAATTTT 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CCGATTATGCACGACAGTGATCGATATGACTTCGTTAAGGATATTGGTTCTGGTAATTTC 241
Query 121 GGTGTTGCTCGTCTTATGAGAGATAAACTCACTAAAGAGCTTGTTGCTGTCAAGTACATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GGTGTTGCTCGTCTTATGAGAGATAAACTCACTAAAGAGCTTGTTGCTGTCAAGTACATC 301
Query 181 GAGAGAGGAGACAAGATTGATGAGAATGTTCAAAGGGAAATAATTAACCACAGGTCGTTA 240
||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 302 GAGAGAGGAGACAAGATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTA 361
Query 241 AGGCATCCTAATATTGTCAGATTTAAAGAGGTCATTTTGACACCGACTCATCTGGCTATC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 362 AGGCATCCTAATATTGTCAGATTTAAAGAGGTCATTTTGACGCCGACTCATCTGGCTATC 421
Query 301 GTAATGGAATATGCTTCTGGCGGTGAACTTTACGAGCGGATTTGCATTGCAGGACGGTTT 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 422 ATAATGGAATATGCTTCTGGCGGTGAACTTTACGAGCGGATTTGCAATGCAGGACGGTTT 481
Query 361 AGTGAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTCAGTTATTGTCAT 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 482 AGTGAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTCTATCTGGAGTCAGTTATTGTCAT 541
Query 421 GCAATGCAAATTTGCCATCGCGACCTGAAGCTCGAGAATACATTGTTGGATGGGAGTCCT 480
| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 542 TCGATGCAAATTTGCCATCGTGACCTGAAGCTAGAGAATACATTGTTGGATGGAAGTCCT 601
Query 481 GCTCCTCGATTAAAAATTTGTGATTTTGGATATTCAAAGTCTTCTGTTCTTCATTCACAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GCTCCTCGATTAAAAATTTGTGATTTTGGATATTCAAAGTCTTCTGTTCTTCATTCACAA 661
Query 541 CCAAAGTCAACTGTCGGGACTCCTGCATACATCGCTCCGGAGGTTCTGCTTCGTCAGGAA 600
|||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 662 CCAAAGTCAACTGTTGGTACTCCTGCATACATCGCTCCAGAGGTACTGCTTCGTCAGGAA 721
Query 601 TATGATGGCAAGATTGCAGATGTATGGTCATGTGGTGTGACCTTATACGTCATGTTGGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TATGATGGCAAGATTGCAGATGTATGGTCATGTGGTGTGACCTTATACGTCATGTTGGTT 781
Query 661 GGAGCTTATCCGTTCGAAGATCCAGATGAGCCTAGAGACTATCGGAAAACAATACAGAGA 720
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 782 GGAGCGTATCCGTTCGAAGATCCAGAAGAGCCAAGAGACTATCGGAAAACAATACAGAGA 841
Query 721 ATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGATATCACCTGAATGCTGTCAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGATATCACCTGAATGCTGTCAT 901
Query 781 CTAATTTCAAGAATCTTTGTGGCTGATCCCGCTACTAGAATTAGCATTCCAGAGATCAAA 840
|| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 902 CTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACCAGAATAAGCATACCAGAGATCAAA 961
Query 841 ACCCATAATTGGTTCTTGAAGAATCTCCCAGCTGATCTACTGAACGAGAGCAACACAGGA 900
||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 962 ACCCATAGTTGGTTCTTGAAGAATCTCCCTGCTGATCTAATGAACGAGAGCAACACAGGA 1021
Query 901 AGCCAATTTCAGGAGCCTGAACAACCAATGCAGAGCCTTGACACAATCATGCAAATCATC 960
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1022 AGCCAGTTCCAGGAGCCTGAACAACCAATGCAAAGCCTTGACACAATCATGCAAATCATC 1081
Query 961 TCTGAAGCCACAATTCCCGCTGTTCGAAACCGTTGCCTAGACGATTTCATGACAGACAAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1082 TCTGAAGCCACAATTCCCGCTGTTCGAAACCGTTGCCTAGACGATTTCATGACTGACAAT 1141
Query 1021 CTTGATCTTGACGATGACATGGATGACTTCGATTCTGAATCTGAAATCGACATTGACAGT 1080
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1142 CTTGATCTTGACGATGACATGGATGACTTTGACTCTGAATCTGAAATCGACATTGACAGT 1201
Query 1081 AGCGGAGAGATAGTTTACGCTCTCTAATaaaaa 1113
|||||||||||||||||||||||||||||||||
Sbjct 1202 AGCGGAGAGATAGTTTACGCTCTCTAATAAAAA 1234
> AT3G50500.2 | Symbols: SNRK2.2 | SNF1-related protein kinase
2.2 | chr3:18741594-18744157 REVERSE LENGTH=1574
Length=1574
Score = 941 bits (509), Expect = 0.0
Identities = 889/1070 (83%), Gaps = 35/1070 (3%)
Strand=Plus/Plus
Query 64 ATTATGCACGACAGTGATCGATATGACTTCGTTAAGGATATTGGTTCTGGTAATTTTGGT 123
|||||||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||
Sbjct 299 ATTATGCACGACAGTGATCGTTACGACTTCGTTAAAGATATTGGCTCTGGTAATTTCGGC 358
Query 124 GTTGCTCGTCTTATGAGAGATAAACTCACTAAAGAGCTTGTTGCTGTCAAGTACATCGAG 183
||||||||||| |||| |||| | |||| || |||||||||||||| || |||||||||
Sbjct 359 GTTGCTCGTCTCATGACCGATAGAGTCACCAAGGAGCTTGTTGCTGTTAAATACATCGAG 418
Query 184 AGAGGAGACAAGATTGATGAGAATGTTCAAAGGGAAATAATTAACCACAGGTCGTTAAGG 243
|||||||| ||||||||||| |||||||| ||||| || || || || || || || ||
Sbjct 419 AGAGGAGAAAAGATTGATGAAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGA 478
Query 244 CATCCTAATATTGTCAGATTTAAAGAGGTCATTTTGACACCGACTCATCTGGCTATCGTA 303
|||||||||||||| || ||||||||||| |||||||| || | ||| ||||||| ||
Sbjct 479 CATCCTAATATTGTTAGGTTTAAAGAGGTGATTTTGACGCCTTCCCATTTGGCTATTGTT 538
Query 304 ATGGAATATGCTTCTGGCGGTGAACTTTACGAGCGGATTTGCATTGCAGGACGGTTTAGT 363
|||||||||||| |||| || |||||||| ||||||||||| | ||| ||||||||||||
Sbjct 539 ATGGAATATGCTGCTGGTGGAGAACTTTATGAGCGGATTTGTAATGCCGGACGGTTTAGT 598
Query 364 GAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTCAGTTATTGTCATGCA 423
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 599 GAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCATGCA 658
Query 424 ATGCAAATTTGCCATCGCGACCTGAAGCTCGAGAATACATTGTTGGATGGGAGTCCTGCT 483
|||||||| |||||||| || |||||||| || ||||||||||| ||||| ||||| ||
Sbjct 659 ATGCAAATATGCCATCGGGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCA 718
Query 484 CCTCGATTAAAAATTTGTGATTTTGGATATTC-AA---A-----------------GTCT 522
||||| || ||||| ||||||||||| ||||| || | ||||
Sbjct 719 CCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCAAGTCT 778
Query 523 TCTGTTCTTCATTCACAACCAAAGTCAACTGTCGGGACTCCTGCATACATCGCTCCGGAG 582
|||||||||||||| ||||||||||||||||| || |||||||||||||| || || |||
Sbjct 779 TCTGTTCTTCATTCCCAACCAAAGTCAACTGTTGGTACTCCTGCATACATTGCACCAGAG 838
Query 583 GTTCTGCTTCGTCAGGAATATGATGGCAAGATTGCAGATGTATGGTCATGTGGTGTGACC 642
|||| ||||| |||||||||||||||||| |||||||||||||||| || ||||| ||
Sbjct 839 ATTCTTCTTCGACAGGAATATGATGGCAAGCTTGCAGATGTATGGTCTTGCGGTGTAACA 898
Query 643 TTATACGTCATGTTGGTTGGAGCTTATCCGTTCGAAGATCCAGATGAGCCTA-GAGACTA 701
||||| || |||||||||||||||||||| ||||| |||||| | ||||| | |||| ||
Sbjct 899 TTATATGTAATGTTGGTTGGAGCTTATCCATTCGAGGATCCACAGGAGCC-ACGAGATTA 957
Query 702 TCGGAAA-ACAATACAGAGAATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGA 760
||| ||| |||||||| ||||||||||| || | |||||| ||||| || ||| |||
Sbjct 958 TCG-AAAGACAATACAAAGAATCCTTAGTGTCACATACTCGATCCCAGAGGACTTACACC 1016
Query 761 TATCACCTGAATG-CTGTCATCTAATTTCAAGAATCTTTGTGGCTGATCCCGCTACTAGA 819
| ||||| ||||| | | |||||||| || || ||||| ||||||||||| || || |||
Sbjct 1017 TCTCACCAGAATGTC-GCCATCTAATATCGAGGATCTTCGTGGCTGATCCGGCAACAAGA 1075
Query 820 ATTAGC-ATTCCAGAGATCAAAACCCATAATTGGTTCTTGAAGAATCTCCCAGCTGATCT 878
|| | | ||||| ||||||| | || |||| ||||||||||||||||| |||| |||| |
Sbjct 1076 ATCA-CTATTCCGGAGATCACATCCGATAAATGGTTCTTGAAGAATCTACCAGGTGATTT 1134
Query 879 -ACTGAACGAGAGCA-ACACAGGAAGCCAATTTCAGGAGCCTGAACAACCAATGCAGAGC 936
| || | |||| | | | ||||| || ||||| |||||||| || ||||||||||||
Sbjct 1135 GA-TGGATGAGAACCGA-ATGGGAAGTCAGTTTCAAGAGCCTGAGCAGCCAATGCAGAGC 1192
Query 937 CTTGACACAATCATGCAAATCATCTCTGAAGCCACAATTCCCG-CTGTTCGAAACCGTTG 995
|||||||| || ||||| || || || || || || ||||| | ||||||| || |||||
Sbjct 1193 CTTGACACGATTATGCAGATAATATCGGAGGCTACGATTCC-GACTGTTCGTAATCGTTG 1251
Query 996 CCTAGACGATTTCATGACAGACAATCTTGATCTTGACGATGACATGGATGACTTCGATTC 1055
||| || ||||||||| | || ||||||||||| |||||||||||||||||||| |||||
Sbjct 1252 CCTCGATGATTTCATGGCGGATAATCTTGATCTAGACGATGACATGGATGACTTTGATTC 1311
Query 1056 TGAATCTGAAATCGACATTGACAGTAGCGGAGAGATAGTTTACGCTCTCT 1105
|||||||| || || |||||||||| |||||||||||||| |||||||
Sbjct 1312 CGAATCTGAGATTGATGTTGACAGTAGTGGAGAGATAGTTTATGCTCTCT 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5