BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951545
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66860.1 | Symbols: | Ribosomal protein L25/Gln-tRNA synthe... 1199 0.0
> AT5G66860.1 | Symbols: | Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain | chr5:26701052-26702569 REVERSE
LENGTH=969
Length=969
Score = 1199 bits (649), Expect = 0.0
Identities = 744/788 (94%), Gaps = 13/788 (2%)
Strand=Plus/Plus
Query 1 GAACTCTAAACCACACTGAGATGGCGAAATGGTGGCGTGGCCTGAGA----T--C--C-- 50
||||||||||||||||||||||||||||||||||||| ||||||||| | | |
Sbjct 19 GAACTCTAAACCACACTGAGATGGCGAAATGGTGGCGAGGCCTGAGATCCGTGACGGCGG 78
Query 51 --GTGGCTGATCTGCCGGCGTCTTCATTCGGTCGATCGATTCGGTGTATTCATCAGTATC 108
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 79 AGGTGGCTGATCTTCCGGCTTCTTCATTCGGTCGATCGATTCGATGTATTCATCAGTATC 138
Query 109 AGACGATCCAGGCGATTCCACGTGAAGCTACGGGTCGAGGAGTATCGGCTCGGGATCGGA 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AGACGATCCAGGCGATTCCACGTGAAGCTACGGGTCGAGGAGTATCGGCTCGGGATCGGA 198
Query 169 CGATTGGCCGGATTCCCGCCGTGGTTTTCCCGCAATCGCTTCTTGAGACTGATGCTTCGA 228
||||||| || ||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 199 CGATTGGTCGTATTCCCGCCGTCGTTTTCCCGCAATCGCTTCTAGATACTGATGCTTCGA 258
Query 229 AGCGAGGCGTTTCGAGGAAGCAGCTATTGACGGCGGATAAGAAGCAGATTAAGTCTATTA 288
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 259 AGCGAGGCGTGTCGAGGAAGCAGCTATTGACGGCGGATAAGAAGCAGATCAAGTCTATTA 318
Query 289 TTGACTCTGTTGGTCTCCCATTCTTCTGTTCGACCACTTTCCAGCTTCAGATCCGAGCTG 348
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 319 TTGACTCTGTTGGTCTCCCATTCTTCTGTTCTACCACTTTCCAGCTTCAGATCCGAGCTG 378
Query 349 GTCAGGGTTCTTCGACGCTTGTTGAATCGGGTCGAGTACTTCCCCTCAAGATTCATAGAG 408
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 379 GTCAGGGTTCGTCGACGCTTGTTGAATCGGGTCGAGTACTTCCCCTCAAGGTTCATAGAG 438
Query 409 ACGAAGAAACTGGAAAGATACTTAATTTAGTATTCGTATGGGCTGATGATGGGGAGAAGT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ACGAAGAAACTGGAAAGATACTTAATTTAGTATTCGTATGGGCTGATGATGGGGAGAAGT 498
Query 469 TGAAGGTTGATGTTCCTGTTGTTTTCAAAGGATTGGATAATTGTCCTGGTCTCAAGAAAG 528
||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 499 TGAAGGTTGATGTTCCTGTTGTTTTCAAAGGGTTGGATCATTGTCCTGGTCTCCAGAAAG 558
Query 529 GGGGAAACCTACGGTCAATCCGAAGCACTCTGAAACTACTAGGGCCAGCGGAACACATTC 588
|||||||||| ||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 559 GGGGAAACCTGCGGACAATCCGAAGCACTCTGAAACTACTAGGGCCAGCTGAGCACATTC 618
Query 589 CATCTAAAATCGAAGTAGATGTGAGCAAACTCGACATCGAAGACAAAGTGTTATTGCAAG 648
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 619 CATCTAAAATCGAAGTAGATGTGAGCAATCTGGACATTGAAGACAAAGTGTTATTGCAAG 678
Query 649 AAGTTGTATTTCATCCATCACTAAAGCTACTGAGCAAGAATGAAACCATGCCTGTGTGTA 708
| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 679 ACGTTGTATTTCATCCATCATTGAAGCTACTGAGCAAGAATGAAACCATGCCCGTGTGTA 738
Query 709 AGATTGTCGCCGCTAGCCCGGTGAAAGAACCAGAAGCTGTTCAAGCATAAAATAAGTCCC 768
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGATTGTCGCCACAAGCCCGGTGAAAGAACCAGAAGCTGTTCAAGCATAAAATAAGTCT- 797
Query 769 TTGAAAAG 776
||||||||
Sbjct 798 TTGAAAAG 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5