BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951548
Length=233
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66830.1 | Symbols: | F-box family protein with a domain of... 366 4e-101
> AT5G66830.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr5:26691304-26692488 FORWARD
LENGTH=1185
Length=1185
Score = 366 bits (198), Expect = 4e-101
Identities = 212/219 (97%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 1 ATCACAGTGCTCGCCAAGGACATGCAAGGGATCAAGGCCAATTCCATCTACTTCTCCAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATCACAGTGCTCGCCAAGGACATGCAAGGGATCAAGGCCAATTCCATCTACTTCTCCAAT 1017
Query 61 CCTACTCCTTATTTTCAAGATCAATATGACAAAAACGAAATCTTCATATTCGACCTCGAT 120
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1018 CCTACTCCTTATTTTAAAGATCAATATGACGAAAACGAAATCTTCATATTCGACCTCGAT 1077
Query 121 TCCAACACGGTTGAACAACCGCACCGATGTGTTTCCTCTTCCTTTCCCCGCTCTAGATCC 180
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1078 TCCAACACCGTTGAACAACCGCACCGATCTGTTTCCTCTTCCTTTCCCCGCTCTAGAGCC 1137
Query 181 CGATGGTTCTTGCCATGTTTCAAACGAGAATGATTCTTC 219
||||||||||||||||||||||||||||||| || ||||
Sbjct 1138 CGATGGTTCTTGCCATGTTTCAAACGAGAATCATACTTC 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10505959541
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5