BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951549
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66830.1 | Symbols: | F-box family protein with a domain of... 204 4e-52
> AT5G66830.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr5:26691304-26692488 FORWARD
LENGTH=1185
Length=1185
Score = 204 bits (110), Expect = 4e-52
Identities = 191/229 (83%), Gaps = 10/229 (4%)
Strand=Plus/Plus
Query 1 GTATCGAAGAGTGTTTTAGCATGGTTTTTAAGGATCATAAACTTTACTGTCTCAACTATT 60
||||||||||||||||||||||||||||||||||||| |||||||||||||| | | |||
Sbjct 584 GTATCGAAGAGTGTTTTAGCATGGTTTTTAAGGATCACAAACTTTACTGTCTGAGCAATT 643
Query 61 ATAAACTCAAGATCTTCGATTTCTCTGGAGATATTCCGGTCAAAGTTTTCACAACTTGCG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 644 ATAAACTCAAGGTCTTCGATTTCTCTGGAGATATTCCGGTCAAAGTTTTCAAAACTAGCG 703
Query 121 TTAGTGAGT-GCTTAAA-A--CCACGAGG-AGGAGGAGGTGGTTTTATGAGACTTCCTGG 175
| ||| ||| | ||||| | |||| | | | | | | ||||||||||||||
Sbjct 704 TAAGTAAGTTG-TTAAATAATCCACTATGTATTTCCATGAGA----ATGAGACTTCCTGG 758
Query 176 ATTTCCAGTGAATGACCAGTTGAGTCACCGGAAGGATAATATGGTGGTC 224
| ||||| |||| |||||||||| |||| |||||| ||||||| |||
Sbjct 759 AATTCCAATGAAGGACCAGTTGAATCACTTCAAGGATGATATGGTAGTC 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13572292230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5